Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17217 g17217.t14 TTS g17217.t14 12850741 12850741
chr_4 g17217 g17217.t14 isoform g17217.t14 12850854 12851772
chr_4 g17217 g17217.t14 exon g17217.t14.exon1 12850854 12851526
chr_4 g17217 g17217.t14 cds g17217.t14.CDS1 12850854 12851526
chr_4 g17217 g17217.t14 exon g17217.t14.exon2 12851581 12851650
chr_4 g17217 g17217.t14 cds g17217.t14.CDS2 12851581 12851591
chr_4 g17217 g17217.t14 exon g17217.t14.exon3 12851725 12851772
chr_4 g17217 g17217.t14 TSS g17217.t14 12851771 12851771

Sequences

>g17217.t14 Gene=g17217 Length=791
AATTGAACTGGAATAATCGACAAATAAATTGAGTGACAAATTTTTTAAAGTGACGAATAA
ACCAAATAAAAGTAAAAGAATTTTACTTTGAAGAAAATTTCACAAAAATGGACGCTCAAG
AAAATAATAATGATGTTAAAACAACTGTTGATGAAGATATTGTTACGGAAGAGCAAAATG
ACTCAGGCATTGGCACTGATGCATCTTCAGTGTCTTCTGACGCGAGCTACCAAACTGTTT
TGAGCAACACTTCTATTTCTTTAGATTCGATGAATATAAATAGCTCAGAAGAAGATGAAA
AGAATGCTGATGCACAACTGGATTTTGCTCTAGAAGACACTCTTGAATTAATAATTGAAC
GAGATGATAAAGAAATTCCATTAAACATGGACAAAACTGCGACAATTTCTGATGTTCTTA
ATCAAGCATCTTTAATTGGAAATTTTACAAGTGATGATTTTGATTTGTCAATTGATAGCA
AAACTTTACCACGAACAATCAGTCTTCGTGATGCAGCCATCACTTATGGAAGTCGCATTC
GTTTAGTTGAGCGTCCATTTCAAATTTTTATTCGTCGTGTTGATGGTCGCATTTTGACTT
TGGATGTCACTTCCTCAAACACTATTGAATATTTGAAAGAACGATTCAATTACACTGATC
AAGTTCCAATTCATCAACAAAGATTGTTGTATCAAAGTCAAGAATTGGAAAATTCACGTA
CTTTGCAATTTTATAAAATTCGCAAAAATGCAACACTTGAAATGGTCTACAGACTTCGTG
GTGGATTTTAA

>g17217.t14 Gene=g17217 Length=227
MDAQENNNDVKTTVDEDIVTEEQNDSGIGTDASSVSSDASYQTVLSNTSISLDSMNINSS
EEDEKNADAQLDFALEDTLELIIERDDKEIPLNMDKTATISDVLNQASLIGNFTSDDFDL
SIDSKTLPRTISLRDAAITYGSRIRLVERPFQIFIRRVDGRILTLDVTSSNTIEYLKERF
NYTDQVPIHQQRLLYQSQELENSRTLQFYKIRKNATLEMVYRLRGGF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g17217.t14 Gene3D G3DSA:3.10.20.90 - 148 227 1.4E-22
12 g17217.t14 MobiDBLite mobidb-lite consensus disorder prediction 1 39 -
13 g17217.t14 MobiDBLite mobidb-lite consensus disorder prediction 23 39 -
2 g17217.t14 PANTHER PTHR10666 UBIQUITIN 47 226 2.1E-18
3 g17217.t14 PANTHER PTHR10666:SF350 UBIQUITIN 13 47 226 2.1E-18
6 g17217.t14 PRINTS PR00348 Ubiquitin signature 161 181 8.2E-12
5 g17217.t14 PRINTS PR00348 Ubiquitin signature 182 202 8.2E-12
4 g17217.t14 PRINTS PR00348 Ubiquitin signature 203 224 8.2E-12
1 g17217.t14 Pfam PF00240 Ubiquitin family 153 224 9.0E-16
14 g17217.t14 ProSiteProfiles PS50053 Ubiquitin domain profile. 151 226 19.782
10 g17217.t14 SMART SM00213 ubq_7 79 149 18.0
11 g17217.t14 SMART SM00213 ubq_7 151 222 2.2E-14
8 g17217.t14 SUPERFAMILY SSF54236 Ubiquitin-like 86 149 9.52E-6
7 g17217.t14 SUPERFAMILY SSF54236 Ubiquitin-like 149 226 1.17E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed