General information for g17221.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17221 is located on chr_4: 12861807..12865322 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17221 | g17221.t2 | isoform | g17221.t2 | 12861807 | 12862919 |
| chr_4 | g17221 | g17221.t2 | exon | g17221.t2.exon1 | 12861807 | 12862641 |
| chr_4 | g17221 | g17221.t2 | cds | g17221.t2.CDS1 | 12861807 | 12862641 |
| chr_4 | g17221 | g17221.t2 | exon | g17221.t2.exon2 | 12862815 | 12862919 |
| chr_4 | g17221 | g17221.t2 | cds | g17221.t2.CDS2 | 12862815 | 12862816 |
| chr_4 | g17221 | g17221.t2 | TSS | g17221.t2 | NA | NA |
| chr_4 | g17221 | g17221.t2 | TTS | g17221.t2 | NA | NA |
Sequences
>g17221.t2 Gene=g17221 Length=940
ATCAGTTGAATAACAGAATTTGTAAAGTGAAGAACAATCTATAAAAATATTTTTTAAAAA
AATTATTAAATTTTTGCTTTAGTTTTTGAATTTTAAAAAAAAAATGACTTCAAAGAATCC
AACAAAAATTATCATTCTGACAATTTTCCTTCTTTTTCTCACTCAAAAATCTTTTTCTTT
ACGCCTCGATTGCAATTTTGTAAATTTTTTCTGGGCAACACTTTCTCATACTTATTCATG
TGATGCAACTATAGAAAAATGTGTAAATGACGATGACGACACTTGTGAATCAAACAGACC
AGAAGTCAATGCAATTTATGGCTTACATGAAGAAAATGAAAGAAATAAATTGAGACAAAG
TGATGAAACTGTTCATGGACTTTTAATTGTTCATCAGCGGCATGTGACAAAATTTCCTCG
AAATATTGAAGGATATTTTCCAAATTTACTTGGTATTGATATGGAAGGTTGCGGATTGAC
GACAATTTCAGCTAGAGATTTAGCGCCATTCAAGAATCTTCGACAAATTTCATTGGAAGA
CAATAAAATCACAGAACTTGCATCAAATTTATTTCATCATAATCCAAACTTGCGTAGAAT
TGACTTGGAAGGGAACAACATTATTCACATTGGTCTTGATATTTTTAGACATTTAAATCA
ACTCGAAATTGTTTATTTACGTTACAATCCATGCACAAATGATAATTCTCTTGCACTCAA
TAGAGCTGAAATGAAAGTCCTCGAATGGGAAATTCAAGTCGAATGTCCTGCAACTTTAAA
TATGCTTTCACATGCACTTGTTGGATCGAAAACTTTTAAGGAAACTTTCGAAAGATTGTC
TGAAGAATATTTTGGAATTGTTCGTGAAGAAATGATGGAACAAATTAAAGACTTAAAGAA
ACAATTTGAAAATTTGAAGAAAAATAGTAGAATAAGATAA
>g17221.t2 Gene=g17221 Length=278
MTSKNPTKIIILTIFLLFLTQKSFSLRLDCNFVNFFWATLSHTYSCDATIEKCVNDDDDT
CESNRPEVNAIYGLHEENERNKLRQSDETVHGLLIVHQRHVTKFPRNIEGYFPNLLGIDM
EGCGLTTISARDLAPFKNLRQISLEDNKITELASNLFHHNPNLRRIDLEGNNIIHIGLDI
FRHLNQLEIVYLRYNPCTNDNSLALNRAEMKVLEWEIQVECPATLNMLSHALVGSKTFKE
TFERLSEEYFGIVREEMMEQIKDLKKQFENLKKNSRIR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g17221.t2 | Coils | Coil | Coil | 254 | 278 | - |
| 6 | g17221.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 81 | 231 | 1.2E-20 |
| 2 | g17221.t2 | PANTHER | PTHR45617:SF5 | COMMON DPR-INTERACTING PROTEIN | 77 | 200 | 8.1E-14 |
| 3 | g17221.t2 | PANTHER | PTHR45617 | - | 77 | 200 | 8.1E-14 |
| 1 | g17221.t2 | Pfam | PF13855 | Leucine rich repeat | 138 | 196 | 5.7E-11 |
| 9 | g17221.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 25 | - |
| 10 | g17221.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 8 | - |
| 11 | g17221.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 9 | 20 | - |
| 12 | g17221.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 21 | 25 | - |
| 8 | g17221.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 26 | 278 | - |
| 13 | g17221.t2 | SMART | SM00369 | LRR_typ_2 | 136 | 159 | 0.22 |
| 14 | g17221.t2 | SMART | SM00369 | LRR_typ_2 | 161 | 183 | 23.0 |
| 4 | g17221.t2 | SUPERFAMILY | SSF52058 | L domain-like | 94 | 204 | 4.31E-19 |
| 5 | g17221.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 25 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed