General information for g17222.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glucose dehydrogenase.
Parent gene
- The parent gene g17222 is located on chr_4: 12865952..12867842 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17222 | g17222.t1 | TSS | g17222.t1 | 12865901 | 12865901 |
| chr_4 | g17222 | g17222.t1 | isoform | g17222.t1 | 12865952 | 12867842 |
| chr_4 | g17222 | g17222.t1 | exon | g17222.t1.exon1 | 12865952 | 12866078 |
| chr_4 | g17222 | g17222.t1 | cds | g17222.t1.CDS1 | 12865952 | 12866078 |
| chr_4 | g17222 | g17222.t1 | exon | g17222.t1.exon2 | 12866219 | 12866635 |
| chr_4 | g17222 | g17222.t1 | cds | g17222.t1.CDS2 | 12866219 | 12866635 |
| chr_4 | g17222 | g17222.t1 | exon | g17222.t1.exon3 | 12866725 | 12867842 |
| chr_4 | g17222 | g17222.t1 | cds | g17222.t1.CDS3 | 12866725 | 12867842 |
| chr_4 | g17222 | g17222.t1 | TTS | g17222.t1 | NA | NA |
Sequences
>g17222.t1 Gene=g17222 Length=1662
ATGTTTAATTATTTTCTTTATTTTATTTTAATTACAATTTTTAAAATATTTTCTGAATTT
TTATTTTTTACTGAAAATTCTTTTGATTCGTCACTTCCTGTTGAAGATAATTATGATTTT
ATTGTTGTTGGTTCAGGAAGCAGTGGCGGTTTAATAGCAACAAATTTAAAAGGAAAAGTT
CTTCTAATTGAAGCAGGTGCTTATGGCTCAGGAGTATTTTTTAACATTCCAATAATTCAA
CCCTTGCTGCTTAGATCAAAATATGACTGGAAACATGAAACAATTTCACAAGAAAATTCC
TGCAAAGCAATGAATGGCAACAAATGTTTTTGGCCAGCTGGAAAAATTCTTTCTGGATCA
CATCGATTGAATAATATGATTTATCATCGTGGATTTAAGGAAGATTATGAAAATTATGTT
AATGGAAATTTAGCAGAGAAACTTTTTGAAGAAGTTGAGAAAAACATTCCAGTTAGTGAG
ACAAATTTTAAATCGAAAGCTGGTGAGGCTTTTATTTATGGAATGAAAGAAATTGGATTT
GAAGTTTTAGATTTCAACTTCACAAACCTAACTCAGTTCTATGGCAAACGTTACACTCAA
TTTTACAACTGGCACAGAAAAACTTCAGCTCCAGAAACAATTCTTAATGCACAAGTTACA
AAAATAATTTTCAAAAACAAAAATGCAATCGGAATTGAATTTATAAAAAACGACAAAATT
CATAAAATTTTTGGTAAAAAAATAATTTTATCAGCTGGAACAATTGGATCAGCTAAAATT
TTACTTCATTCTGGTGTTGGACCTAAAAAGCATTTAGAAGAAATGGGAATTGAAATTATT
GAAAATTTGCCAGTTGGTGAAAATCTTCAAGATCATGTAACGACAAATATTGATTTGATG
GTGGCGCAAAAGAGTGAAAATTCAATTTTAGATGTTTGCAATCCTTGGAAAATTATTAAA
TATTTCTGGAATGGGAGTGGTCCAATGTCACTTGGTGGTTCTGATGCTATGGGATTTTTA
AAACTGCAAAATTCATCAATCACTCCTGATTTAAGTTTTATTTTTTTACCTGTTGGAATT
GCTGATGATTTTGGAATTCATTTGAGAAAAGTTTTGAACTTCAAAGATGATTTATGGGAG
AAATTTTATAAACCTTTAACTGGACAAAGTTTTGCTACAATTTTACCAATTATTTTGCAT
CCTAAAAGTAGAGGAAATTTAAGACTGAGCAGCAAAAACTTTAATGATCCAATTTTAATT
GATCCAAAATACTATGAAGCTAAAAATGATATAAAAATTATGATAAAAGCAATTCGAATA
ATTCAAAAATTAATTGAAACTTCAATAATGAAAGAAATTGGTGCAGAATTAATTCCTAAA
TCACTACCTGGATGTGAAAATTTTAAATTTAATTCTGATGATTATTGGGAATGTTACGTT
CGACATTTGACATTGACAATGTATCATCCTGTTGGAACTTGTAAAATGGGAAATTATGAT
GAAAATTCGACAGTTGTATTGAAAAATTTCCAAGTAAAGAATTTAGAAAATTTATTTGTT
GTTGATGGATCTGTTTTGTCAAATTCTCCAAGTGCAAATCCACATGCTTTGATCTCAATG
TTGGCTATGAAATTTACAAATGAAATGAACAAGGAACATTAA
>g17222.t1 Gene=g17222 Length=553
MFNYFLYFILITIFKIFSEFLFFTENSFDSSLPVEDNYDFIVVGSGSSGGLIATNLKGKV
LLIEAGAYGSGVFFNIPIIQPLLLRSKYDWKHETISQENSCKAMNGNKCFWPAGKILSGS
HRLNNMIYHRGFKEDYENYVNGNLAEKLFEEVEKNIPVSETNFKSKAGEAFIYGMKEIGF
EVLDFNFTNLTQFYGKRYTQFYNWHRKTSAPETILNAQVTKIIFKNKNAIGIEFIKNDKI
HKIFGKKIILSAGTIGSAKILLHSGVGPKKHLEEMGIEIIENLPVGENLQDHVTTNIDLM
VAQKSENSILDVCNPWKIIKYFWNGSGPMSLGGSDAMGFLKLQNSSITPDLSFIFLPVGI
ADDFGIHLRKVLNFKDDLWEKFYKPLTGQSFATILPIILHPKSRGNLRLSSKNFNDPILI
DPKYYEAKNDIKIMIKAIRIIQKLIETSIMKEIGAELIPKSLPGCENFKFNSDDYWECYV
RHLTLTMYHPVGTCKMGNYDENSTVVLKNFQVKNLENLFVVDGSVLSNSPSANPHALISM
LAMKFTNEMNKEH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g17222.t1 | Gene3D | G3DSA:3.50.50.60 | - | 38 | 544 | 1.7E-94 |
| 8 | g17222.t1 | Gene3D | G3DSA:4.10.450.10 | Glucose Oxidase | 67 | 199 | 1.7E-94 |
| 10 | g17222.t1 | Gene3D | G3DSA:1.10.1220.110 | - | 129 | 162 | 1.7E-94 |
| 11 | g17222.t1 | Gene3D | G3DSA:3.30.410.40 | - | 163 | 490 | 1.7E-94 |
| 3 | g17222.t1 | PANTHER | PTHR11552:SF215 | FI02019P | 25 | 545 | 2.3E-129 |
| 4 | g17222.t1 | PANTHER | PTHR11552 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE | 25 | 545 | 2.3E-129 |
| 16 | g17222.t1 | PIRSF | PIRSF000137 | Alcohol_oxidase | 19 | 155 | 4.6E-21 |
| 15 | g17222.t1 | PIRSF | PIRSF000137 | Alcohol_oxidase | 176 | 553 | 4.5E-69 |
| 1 | g17222.t1 | Pfam | PF00732 | GMC oxidoreductase | 38 | 293 | 2.4E-36 |
| 2 | g17222.t1 | Pfam | PF05199 | GMC oxidoreductase | 401 | 544 | 7.5E-34 |
| 12 | g17222.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 4 | - |
| 14 | g17222.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 23 | - |
| 13 | g17222.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 553 | - |
| 7 | g17222.t1 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 34 | 548 | 1.37E-49 |
| 6 | g17222.t1 | SUPERFAMILY | SSF54373 | FAD-linked reductases, C-terminal domain | 288 | 493 | 1.18E-39 |
| 5 | g17222.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2 | 24 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
