General information for g17225.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trypsin-4.
Parent gene
- The parent gene g17225 is located on chr_4: 12874617..12876909 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17225 | g17225.t5 | isoform | g17225.t5 | 12873906 | 12875905 |
| chr_4 | g17225 | g17225.t5 | exon | g17225.t5.exon1 | 12873906 | 12874699 |
| chr_4 | g17225 | g17225.t5 | TTS | g17225.t5 | 12873922 | 12873922 |
| chr_4 | g17225 | g17225.t5 | cds | g17225.t5.CDS1 | 12874672 | 12874699 |
| chr_4 | g17225 | g17225.t5 | exon | g17225.t5.exon2 | 12874821 | 12874874 |
| chr_4 | g17225 | g17225.t5 | cds | g17225.t5.CDS2 | 12874821 | 12874874 |
| chr_4 | g17225 | g17225.t5 | exon | g17225.t5.exon3 | 12875005 | 12875164 |
| chr_4 | g17225 | g17225.t5 | cds | g17225.t5.CDS3 | 12875005 | 12875164 |
| chr_4 | g17225 | g17225.t5 | exon | g17225.t5.exon4 | 12875221 | 12875466 |
| chr_4 | g17225 | g17225.t5 | cds | g17225.t5.CDS4 | 12875221 | 12875466 |
| chr_4 | g17225 | g17225.t5 | exon | g17225.t5.exon5 | 12875681 | 12875773 |
| chr_4 | g17225 | g17225.t5 | cds | g17225.t5.CDS5 | 12875681 | 12875773 |
| chr_4 | g17225 | g17225.t5 | exon | g17225.t5.exon6 | 12875828 | 12875905 |
| chr_4 | g17225 | g17225.t5 | cds | g17225.t5.CDS6 | 12875828 | 12875870 |
| chr_4 | g17225 | g17225.t5 | TSS | g17225.t5 | 12876927 | 12876927 |
Sequences
>g17225.t5 Gene=g17225 Length=1425
ATGTTCCTGATGCAACGACAAATGATGAATTCCAAATGTGGGAAGGAAGAATTGTTGGTG
GATCACAAGCTCAATTAGGTCAATTTCCATATCAAGTCTCGTTGAGAACAATTCAAAATA
GTCATTTTTGTGGTGGATTCATTCTTAGTAATCGTTGGATTGGATCAGCTGCACATTGCA
CAACACCTCGATCAACATCAAACACACGTGCAGTTGTTGGCACAATTCATCGTTCAACAG
GCGGAAACATTCACAATCTTGCTCGTTTTGTTAATCATCCAGGTTATCAATCAACAACCC
TTGCCAATGATATTTCACTTATTCAAACTGTCAATACAATTACTTTTAACAACATGGTGC
AACCTGTTGGTGTATCATCGACTTTTATTAATGGTGGTGTTAATGCTGTTGCTACAGGTT
GGGGACAAACCAGCAGGACAGGACCAACTTCAAATGTTCTTCTTTGGGTGACTTTAAGGA
CATTAAATAACAATGAATGCAGAGAAAAATTCACAAAATCAAATGCTGCAAGAATTACTG
ATCAAACAATTTGTACATTTACAAGAGTTGGTCAAGGAAATTATTTTAGCGGTGGTCCTT
TAGTAGCTGGTGGTAATGTCATTGGAGGTAAGAATTCCATGTGCTTCCGGATCACCTGAT
GTTTATGTCAGAATTGCATCATATCGATCATGGATTATGAATACCATCGGATAAAAGTGA
CTTACAACTTTAACAAAATTATTTTTTTTCTTTAAAGTTTAATAAAAAAAATTTTAGTTT
TGAAAATATGAAATTTGGAATTTAAGTCAAGAAAACAGGATTTAAAAATTCTCTGATTTA
TTAAGTTCACTATCTTAGGCACTCAAAAATTCTTAGGCTCTGATATTTTGAAATTTCAAG
ATTGTGAGCTTAATAAGTGAAGAAATTTCTTAAGTTTTAGAGTTTTTAACATTTTTAACT
TAGAAACTTAGGAAAGTTTCAGAACTTTTAGTTTCTGCAAAAAACTAGAATTTTTAAATT
AAATTTGACGTAGATTTTAGATTTCTATTTCTTAAAAAAGAAAAGTTTCAAAGTTAAAAT
TTTTTTATTATTTTTGAAAAAAAAAATCACTTAAGTAAAATCAGAAAAAGACAAAATTTT
TAAAATTTTCAAATATTTTTTATGAATGATTGAAAATTTTAAGCTCTAATGAATTTTTTT
GATTTTATTTGACTGTTTTTGAAAAAAAAATTTTTTATGTGACTGCCTAACTTTGTAAAG
AAAATATTTTTAAACTCATAAAAATAATTAAGAAAAGAAATTTTTGTTTAATAGAAAAAA
ATGATGACGATTTTATGGTGCTTGGGTTTAACAATAGAATTTATGTCAAAATTTAAAAAT
AACTAACAAAATAAAAAAGTTTTAAAATTAAATTTTTTTTAACAT
>g17225.t5 Gene=g17225 Length=207
MWEGRIVGGSQAQLGQFPYQVSLRTIQNSHFCGGFILSNRWIGSAAHCTTPRSTSNTRAV
VGTIHRSTGGNIHNLARFVNHPGYQSTTLANDISLIQTVNTITFNNMVQPVGVSSTFING
GVNAVATGWGQTSRTGPTSNVLLWVTLRTLNNNECREKFTKSNAARITDQTICTFTRVGQ
GNYFSGGPLVAGGNVIGGKNSMCFRIT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g17225.t5 | CDD | cd00190 | Tryp_SPc | 6 | 197 | 0.0000000 |
| 8 | g17225.t5 | Gene3D | G3DSA:2.40.10.10 | - | 6 | 197 | 0.0000000 |
| 9 | g17225.t5 | Gene3D | G3DSA:2.40.10.10 | - | 18 | 110 | 0.0000000 |
| 2 | g17225.t5 | PANTHER | PTHR24276 | POLYSERASE-RELATED | 4 | 197 | 0.0000000 |
| 3 | g17225.t5 | PANTHER | PTHR24276:SF83 | GH13245P2-RELATED | 4 | 197 | 0.0000000 |
| 4 | g17225.t5 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 33 | 48 | 0.0000045 |
| 6 | g17225.t5 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 88 | 102 | 0.0000045 |
| 5 | g17225.t5 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 178 | 190 | 0.0000045 |
| 1 | g17225.t5 | Pfam | PF00089 | Trypsin | 6 | 197 | 0.0000000 |
| 12 | g17225.t5 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 6 | 207 | 20.7730000 |
| 11 | g17225.t5 | SMART | SM00020 | trypsin_2 | 5 | 206 | 0.0000000 |
| 7 | g17225.t5 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 3 | 193 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed