General information for g17226.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17226 is located on chr_4: 12878873..12880573 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17226 | g17226.t2 | TSS | g17226.t2 | 12878817 | 12878817 |
| chr_4 | g17226 | g17226.t2 | isoform | g17226.t2 | 12878873 | 12880573 |
| chr_4 | g17226 | g17226.t2 | exon | g17226.t2.exon1 | 12878873 | 12879344 |
| chr_4 | g17226 | g17226.t2 | cds | g17226.t2.CDS1 | 12878873 | 12879344 |
| chr_4 | g17226 | g17226.t2 | exon | g17226.t2.exon2 | 12879689 | 12879802 |
| chr_4 | g17226 | g17226.t2 | cds | g17226.t2.CDS2 | 12879689 | 12879741 |
| chr_4 | g17226 | g17226.t2 | exon | g17226.t2.exon3 | 12879951 | 12880140 |
| chr_4 | g17226 | g17226.t2 | exon | g17226.t2.exon4 | 12880206 | 12880337 |
| chr_4 | g17226 | g17226.t2 | exon | g17226.t2.exon5 | 12880404 | 12880439 |
| chr_4 | g17226 | g17226.t2 | exon | g17226.t2.exon6 | 12880497 | 12880573 |
| chr_4 | g17226 | g17226.t2 | TTS | g17226.t2 | 12880777 | 12880777 |
Sequences
>g17226.t2 Gene=g17226 Length=1021
ATGAAGTTCAAAATTTTGACAATTTTTTTCACTTTTGTGTTAGTTTTTTCAATTCATGCT
GAAGACGATTTGACTGAAGAAGATGTAAAAGTGATTGAAGAATTTTTTAAATCAAGAAAT
TTCACTGGTCGTGCATCACGTAATGTAAGAACACCAGAAATTGAAGAACGCGTTAGAAAT
CGTTATAGAAAAATTAAAAAGCATAATGAAAGATTTAAAAAAGGCGAAGAACATTTCGAG
CAAGGATTGAATGACTTTGCACTTTTGAGTGATGGTGAAATTAAAAATTATTTTGGTTAC
AATCCGCCACCATTTGAGACTTTTGATAATGAAACTTTAGTGCCAATTATTGATCCAAAT
GCACGAAGTGGAAAAGCTGCTGAACCTGATTATTGGAACTGGGCTGAACAAGGAAATATA
GTGCAACCAGTTCAGAACCAAGGTGGTTGCGGTAAGTTGAAAATTAAACAGCGCAGCTGG
AGCTTTAGAAGGAAGCATGTGCAGATACTTTGGAAAATGTGTTAAACTATCTGAACAAGA
AATGATGGAATGTACAAATGGTTGTGCTGGTGGATGGGATACTTGGGTCTATGACTATAC
AACTCTTTATAATGGTGCAACTGGAAGTTCATACAGCTATACAGGTGCTCCTAATTCATG
CAATCCATCAGCACGAGTACGTCAAGTTAATTCAATTGTAACAAGTTATAAAATTTTACC
AAATGACGAAGCAACAATTCGTTCTTATCTTTATAGATATGGTCCATTATTTACGGCTTA
TTTTGTCTACAATAATTTTAATTACTACAAGGAAGGAATTATAACAACACAAGAAGGTGA
AATTCTTGGTGGACATGCTGTTTTAATAACTGGTTATGGAACTTCAAATGGAATTCCTTA
TTGGATTGTTAAAAATTCATGGGGAACGAACTGGGGAGAAAAAGGTTACTTCCGCATTTT
AAGAGGTAAAAATTTGATGAACATTGAAGGCTGGAAAGTTTCTTTTCCATGGACAAGATA
A
>g17226.t2 Gene=g17226 Length=174
MKFKILTIFFTFVLVFSIHAEDDLTEEDVKVIEEFFKSRNFTGRASRNVRTPEIEERVRN
RYRKIKKHNERFKKGEEHFEQGLNDFALLSDGEIKNYFGYNPPPFETFDNETLVPIIDPN
ARSGKAAEPDYWNWAEQGNIVQPVQNQGGCGKLKIKQRSWSFRRKHVQILWKMC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g17226.t2 | Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 36 | 162 | 4.3E-12 |
| 6 | g17226.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 7 | g17226.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 8 | g17226.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 16 | - |
| 9 | g17226.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 20 | - |
| 5 | g17226.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 174 | - |
| 2 | g17226.t2 | SUPERFAMILY | SSF54001 | Cysteine proteinases | 60 | 151 | 2.5E-9 |
| 3 | g17226.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 1 | g17226.t2 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed