General information for g17251.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trans-1-2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g17251 is located on chr_4: 12946246..12947879 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17251 | g17251.t4 | TTS | g17251.t4 | 12946119 | 12946119 |
| chr_4 | g17251 | g17251.t4 | isoform | g17251.t4 | 12946246 | 12947170 |
| chr_4 | g17251 | g17251.t4 | exon | g17251.t4.exon1 | 12946246 | 12946503 |
| chr_4 | g17251 | g17251.t4 | cds | g17251.t4.CDS1 | 12946246 | 12946503 |
| chr_4 | g17251 | g17251.t4 | exon | g17251.t4.exon2 | 12946569 | 12946815 |
| chr_4 | g17251 | g17251.t4 | cds | g17251.t4.CDS2 | 12946569 | 12946815 |
| chr_4 | g17251 | g17251.t4 | exon | g17251.t4.exon3 | 12946876 | 12947170 |
| chr_4 | g17251 | g17251.t4 | cds | g17251.t4.CDS3 | 12946876 | 12947120 |
| chr_4 | g17251 | g17251.t4 | TSS | g17251.t4 | 12947946 | 12947946 |
Sequences
>g17251.t4 Gene=g17251 Length=800
ATGCTGTCTACATTGGCTCAATAAATACATGTCATCTAGAAGACAGTATCATGATGCTCG
ATGCAGGCAAGCCAGTTTTATGTGAGAAACCTTTTGCATTGAATGAAAAACAATCTGTTG
AAATTTTTAATCGTGCAAAGGAGAAGAAACTTTTCTGTATGGAAGCAGTTTGGTCACGAT
TTTTACCATCATATGAATACATGAGACATCGTCTTGATAATAATGATTTTGGTGAAATCA
CAGAAGTTGAAATTGAATATGGAAAGGAAAAACTTGGAAAAATGGAAAGAGTTGTCAAAA
AAGATCTTGGCGGTAGCATGTTGTTGGACATTGGAAATTATGCGATTCAATTTGCTCAAT
TTGTTTTCCGCTCATATCCGACATCAATTAAAGCAACTGGCAAATTGAATGATGATGGTG
TTGATGTAGAAGCAGAAATTGAATTGAAATATTTAAATGGTGGCGTTGCTAAAATTAAGA
CTAGTGCCATAAACAATCTTAAAAATCAAGCTAATATTTATGGCAGTAAAGGTTCAATGA
CTGTCGATCAATTTTGGGCTTGTACTTATTTGATCGACATTGATGGACATCCAAAAGAAT
GGAAGCTACCAGAGCCAAAGCAAGGCGAGTTTGTATTTAATAACAGAGCTGGTTTAAGAT
TCCAAGCAGAAGAAACCAGAAGATGCATTAATGAAGGAAAACTTGAAAGTGATCTCATGC
CTCAAAAGGAAACAATTGAAATTGCTCGCATTCGTGATGAAATTCGCAAACAAATTGGTG
TCAGATATGATGAAGATTAA
>g17251.t4 Gene=g17251 Length=249
MMLDAGKPVLCEKPFALNEKQSVEIFNRAKEKKLFCMEAVWSRFLPSYEYMRHRLDNNDF
GEITEVEIEYGKEKLGKMERVVKKDLGGSMLLDIGNYAIQFAQFVFRSYPTSIKATGKLN
DDGVDVEAEIELKYLNGGVAKIKTSAINNLKNQANIYGSKGSMTVDQFWACTYLIDIDGH
PKEWKLPEPKQGEFVFNNRAGLRFQAEETRRCINEGKLESDLMPQKETIEIARIRDEIRK
QIGVRYDED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g17251.t4 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 40 | 6.0e-07 |
| 7 | g17251.t4 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 41 | 249 | 0.0e+00 |
| 2 | g17251.t4 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 1 | 248 | 0.0e+00 |
| 3 | g17251.t4 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 1 | 248 | 0.0e+00 |
| 1 | g17251.t4 | Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 52 | 168 | 1.5e-05 |
| 4 | g17251.t4 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 2 | 65 | 0.0e+00 |
| 5 | g17251.t4 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 45 | 214 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
