General information for g17251.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trans-1-2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g17251 is located on chr_4: 12946246..12947879 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17251 | g17251.t5 | TTS | g17251.t5 | 12946119 | 12946119 |
| chr_4 | g17251 | g17251.t5 | isoform | g17251.t5 | 12946246 | 12947879 |
| chr_4 | g17251 | g17251.t5 | exon | g17251.t5.exon1 | 12946246 | 12946503 |
| chr_4 | g17251 | g17251.t5 | exon | g17251.t5.exon2 | 12946569 | 12947170 |
| chr_4 | g17251 | g17251.t5 | cds | g17251.t5.CDS1 | 12946872 | 12947170 |
| chr_4 | g17251 | g17251.t5 | exon | g17251.t5.exon3 | 12947672 | 12947879 |
| chr_4 | g17251 | g17251.t5 | cds | g17251.t5.CDS2 | 12947672 | 12947879 |
| chr_4 | g17251 | g17251.t5 | TSS | g17251.t5 | 12947946 | 12947946 |
Sequences
>g17251.t5 Gene=g17251 Length=1068
ATGTCTAAACCTTTACGTTGGGGTATTGTATCAGCTGGCAAAATCGCAAATGACTTTTGT
GCAGCTTTGTCAACATTTTCAAATGAAGAACATCAAGTTGTTGCAGTTGCAGCTCGCAAA
GAAGCTGATGCAAAAGAATTTGCCGAAACTTTTAACATTCCAAAATATTATGAAGGATAT
GAAAAATTGGCTAATGACAATGAAGTTGATGCTGTCTACATTGGCTCAATAAATACATGT
CATCTAGAAGACAGTATCATGATGCTCGATGCAGGCAAGCCAGTTTTATGTGAGAAACCT
TTTGCATTGAATGAAAAACAATCTGTTGAAATTTTTAATCGTGCAAAGGAGAAGAAACTT
TTCTGTATGGAAGCAGTTTGGTCACGATTTTTACCATCATATGAATACATGAGACATCGT
CTTGATAATAATGATTTTGGTGAAATCACAGAAGTTGAAATTGAATATGGAAAGGAAAAA
CTTGGAAAAATGGAAAGAGTTGTGTAAGTTTTAATTTTAATTTGCTTCTAATTTTACATA
AAAATTAAAATATTAATTAACAGCAAAAAAGATCTTGGCGGTAGCATGTTGTTGGACATT
GGAAATTATGCGATTCAATTTGCTCAATTTGTTTTCCGCTCATATCCGACATCAATTAAA
GCAACTGGCAAATTGAATGATGATGGTGTTGATGTAGAAGCAGAAATTGAATTGAAATAT
TTAAATGGTGGCGTTGCTAAAATTAAGACTAGTGCCATAAACAATCTTAAAAATCAAGCT
AATATTTATGGCAGTAAAGGTTCAATGACTGTCGATCAATTTTGGGCTTGTACTTATTTG
ATCGACATTGATGGACATCCAAAAGAATGGAAGCTACCAGAGCCAAAGCAAGGCGAGTTT
GTATTTAATAACAGAGCTGGTTTAAGATTCCAAGCAGAAGAAACCAGAAGATGCATTAAT
GAAGGAAAACTTGAAAGTGATCTCATGCCTCAAAAGGAAACAATTGAAATTGCTCGCATT
CGTGATGAAATTCGCAAACAAATTGGTGTCAGATATGATGAAGATTAA
>g17251.t5 Gene=g17251 Length=168
MSKPLRWGIVSAGKIANDFCAALSTFSNEEHQVVAVAARKEADAKEFAETFNIPKYYEGY
EKLANDNEVDAVYIGSINTCHLEDSIMMLDAGKPVLCEKPFALNEKQSVEIFNRAKEKKL
FCMEAVWSRFLPSYEYMRHRLDNNDFGEITEVEIEYGKEKLGKMERVV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g17251.t5 | Gene3D | G3DSA:3.40.50.720 | - | 5 | 165 | 0 |
| 2 | g17251.t5 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 2 | 159 | 0 |
| 3 | g17251.t5 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 2 | 159 | 0 |
| 1 | g17251.t5 | Pfam | PF01408 | Oxidoreductase family, NAD-binding Rossmann fold | 5 | 123 | 0 |
| 4 | g17251.t5 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 2 | 156 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
