General information for g1726.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein-cysteine N-palmitoyltransferase Rasp.
Parent gene
- The parent gene g1726 is located on chr_3: 12769709..12771277 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1726 | g1726.t1 | isoform | g1726.t1 | 12768098 | 12769709 |
| chr_3 | g1726 | g1726.t1 | exon | g1726.t1.exon1 | 12768098 | 12768182 |
| chr_3 | g1726 | g1726.t1 | cds | g1726.t1.CDS1 | 12768098 | 12768182 |
| chr_3 | g1726 | g1726.t1 | exon | g1726.t1.exon2 | 12768240 | 12768409 |
| chr_3 | g1726 | g1726.t1 | cds | g1726.t1.CDS2 | 12768240 | 12768409 |
| chr_3 | g1726 | g1726.t1 | exon | g1726.t1.exon3 | 12768462 | 12769709 |
| chr_3 | g1726 | g1726.t1 | cds | g1726.t1.CDS3 | 12768462 | 12769709 |
| chr_3 | g1726 | g1726.t1 | TTS | g1726.t1 | 12769781 | 12769781 |
| chr_3 | g1726 | g1726.t1 | TSS | g1726.t1 | NA | NA |
Sequences
>g1726.t1 Gene=g1726 Length=1503
ATGAGAAAAGATTTAATCATTTCTGGTTTATTCACCATATTTTTGTACGCTTCTATGACT
TATAGTGTGCAAATTTTGAGTAATTCTGGTTTGAAAACATACAAATATATGAATGATGGC
TGGGAAATATTCAATAGAAAAGTTGATAATCGAAACACGGAATGGCAAACGTTCAAAAAG
TTAATTGAAGAAAACTGGCAATGGTTCGTTATCCACATGATTTTGACAGAAATGTATCGA
ACAAATAAACTATATAATATTTCATTGATACATTTCATTGTTGGATTTGCTGCATGCTTG
CAAATGTTTAATATTCGGATTTTCATTTTGCTGATTTTTCAAAGTTTAATCTGCTATATG
ACTAGCATTTTGTTGAACAAAAAGAGATATGTCTGGTTACTTGCATCGATCTTTTTATTG
ATTCTTAATATGATAAAATCTGTTCAATACAGCAAAATTATAATGAATGCTATGAATATC
AATGAATCAAAAGTTATTTCTTTTATGGTAGCTTACGCATGGTGCATACTCAAAAATATT
AGCTTCTGTCTCGAGATGATTGAAAATAACGAAAAAAATGCTGACAAATTTAAACTAATC
AATTGTTTAGGCTATATTTTCTATCTACCGACATTCATCTGTGGACCATTTTTTTTGTAC
GCTCGATATATGGCAATGCTTGACTATTTAAAATGGAAACAATTTTACACATTTGGTACA
AGGATCAAGAAATTATTAATACAATTTATAAAATATACCTTTCTGTTCATTATGATTGAA
GTTGGATTGCATTTCTTATATATACATCATATACTAATTAGTATTGATGTAAAAACATTG
AGTAATTTAGCACTTGCTGGCATTGGTTTTCTTCGAAGTATGTTTTTCAACATCAAATAT
ATGATTTTCTATGGCCTATCAATAGCAATAGGTGAATTTGAGCACATTCTAATGCCAAAC
GTTCCAAAATGCATTTTCCGAATCTATAAATTTAGTGATATGTGGAAAATGTTTGATCAT
GGGCTTTATGAGTTTCTTTTCAAATACATTTATATTCAAATAACAACTTTCAAATCATTA
GTTATCAAGCTATTTGCTAGTATTATAACATTCTTCTTCATATATATTTGGCATGGATTC
TACAAATTTGTATTTATATGGTGTGTTACAAATTTTGTATGCATCATTTTAGAAAAACTA
ACATACAAATTAATTGAAAGTAATAAATTCAATTCAAAAGCCCTTGCATTATTGAAAACA
AATGAAAATGTTCAATTTATAAAAATAGTTATTGCTGTCAATGTGATGATCCCAGCATTT
ATATCAAACGCTTTCTTCTTTGGAGGTTACACTTATGGAATTGAATGTTTAGAAAGGATT
TATGCACAAGGCTTCTCAAATTATTTAAAAATTTTGAGTTCATTCGTTCTCTTATATCCT
TTAGCTGAAGTAGTAAAAATGTATCAACAATCCAAAACTGAATTCTCTATTAAGAACAAT
TAA
>g1726.t1 Gene=g1726 Length=500
MRKDLIISGLFTIFLYASMTYSVQILSNSGLKTYKYMNDGWEIFNRKVDNRNTEWQTFKK
LIEENWQWFVIHMILTEMYRTNKLYNISLIHFIVGFAACLQMFNIRIFILLIFQSLICYM
TSILLNKKRYVWLLASIFLLILNMIKSVQYSKIIMNAMNINESKVISFMVAYAWCILKNI
SFCLEMIENNEKNADKFKLINCLGYIFYLPTFICGPFFLYARYMAMLDYLKWKQFYTFGT
RIKKLLIQFIKYTFLFIMIEVGLHFLYIHHILISIDVKTLSNLALAGIGFLRSMFFNIKY
MIFYGLSIAIGEFEHILMPNVPKCIFRIYKFSDMWKMFDHGLYEFLFKYIYIQITTFKSL
VIKLFASIITFFFIYIWHGFYKFVFIWCVTNFVCIILEKLTYKLIESNKFNSKALALLKT
NENVQFIKIVIAVNVMIPAFISNAFFFGGYTYGIECLERIYAQGFSNYLKILSSFVLLYP
LAEVVKMYQQSKTEFSIKNN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1726.t1 | PANTHER | PTHR13285 | ACYLTRANSFERASE | 6 | 483 | 6.4E-62 |
| 1 | g1726.t1 | Pfam | PF03062 | MBOAT, membrane-bound O-acyltransferase family | 101 | 410 | 1.0E-20 |
| 26 | g1726.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 27 | g1726.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 28 | g1726.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 15 | - |
| 40 | g1726.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 22 | - |
| 22 | g1726.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 83 | - |
| 34 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 84 | 100 | - |
| 19 | g1726.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 101 | 106 | - |
| 33 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 107 | 124 | - |
| 25 | g1726.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 125 | 129 | - |
| 35 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 145 | - |
| 15 | g1726.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 146 | 164 | - |
| 32 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 187 | - |
| 23 | g1726.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 188 | 206 | - |
| 31 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 207 | 225 | - |
| 14 | g1726.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 226 | 244 | - |
| 29 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 245 | 268 | - |
| 20 | g1726.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 269 | 279 | - |
| 39 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 280 | 298 | - |
| 17 | g1726.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 299 | 359 | - |
| 36 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 360 | 378 | - |
| 21 | g1726.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 379 | 383 | - |
| 38 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 384 | 405 | - |
| 16 | g1726.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 406 | 425 | - |
| 30 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 426 | 448 | - |
| 24 | g1726.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 449 | 459 | - |
| 37 | g1726.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 460 | 482 | - |
| 18 | g1726.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 483 | 500 | - |
| 13 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
| 9 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
| 5 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 150 | - |
| 7 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 187 | - |
| 12 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 199 | 221 | - |
| 4 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 245 | 267 | - |
| 8 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 288 | 310 | - |
| 10 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 354 | 376 | - |
| 6 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 383 | 405 | - |
| 3 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 425 | 447 | - |
| 11 | g1726.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 460 | 482 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K24678 (protein-cysteine N-palmitoyltransferase HHAT [EC:2.3.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed