General information for g17337.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetylgalactosaminyltransferase 7.
Parent gene
- The parent gene g17337 is located on chr_4: 13190516..13192345 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17337 | g17337.t1 | TTS | g17337.t1 | 13189397 | 13189397 |
| chr_4 | g17337 | g17337.t1 | isoform | g17337.t1 | 13189411 | 13192345 |
| chr_4 | g17337 | g17337.t1 | exon | g17337.t1.exon1 | 13189411 | 13190164 |
| chr_4 | g17337 | g17337.t1 | cds | g17337.t1.CDS1 | 13189411 | 13190164 |
| chr_4 | g17337 | g17337.t1 | exon | g17337.t1.exon2 | 13190503 | 13190859 |
| chr_4 | g17337 | g17337.t1 | cds | g17337.t1.CDS2 | 13190503 | 13190859 |
| chr_4 | g17337 | g17337.t1 | exon | g17337.t1.exon3 | 13191173 | 13191572 |
| chr_4 | g17337 | g17337.t1 | cds | g17337.t1.CDS3 | 13191173 | 13191572 |
| chr_4 | g17337 | g17337.t1 | exon | g17337.t1.exon4 | 13191875 | 13191922 |
| chr_4 | g17337 | g17337.t1 | cds | g17337.t1.CDS4 | 13191875 | 13191922 |
| chr_4 | g17337 | g17337.t1 | exon | g17337.t1.exon5 | 13192177 | 13192345 |
| chr_4 | g17337 | g17337.t1 | cds | g17337.t1.CDS5 | 13192177 | 13192345 |
| chr_4 | g17337 | g17337.t1 | TSS | g17337.t1 | 13192589 | 13192589 |
Sequences
>g17337.t1 Gene=g17337 Length=1728
ATGAAAATTGCAATGAGAAGAGGAAGAATTATTCGAATAACTTTGGGATTATCGATAATT
CCATTGTTATATTTACTTTTCACATATTCTGAATCGCACAAAAAATTCAATGAAATTTAC
AGTAAGAAATTAGTGTCGAAAATTAGAGAACCGTTTTTGGCAAGTGAAGGATATGGAAAT
TTTGAGCCGATCGATAAAGAAGTTCATCATGGGCCAGGTGAAGGTGGTCTTCCGTATATC
CACGAAGGATCAAATTCCGACGACTCAGAAATTGAATATGGCATGAATATGTTTATATCT
GATAAAATTTCATTAAATCGAACAATCAGAGACACACGACCAAAAGAATGTAAAAAATGG
AATTATCCTGAAGAATTGCCAAGTGTCAGTGTTATAATTGTCTTTCATAATGAAGGATTT
TCAGTTTTAATGCGCACAGTTCATAGTGTTATTAATAGAAGTCCACAGCAGTATTTAGAA
GAAATTTTATTGGTTGATGATTTTAGCGATAAAAATGATCTCAAAGAGAAATTAGACAAT
TATGTGGAGAGATTTAATGGAAAAGTGAGGGTCATTAGAAATGTTGAAAGAGAAGGATTG
ATTAGAACTAGATCAAGAGGTGCCCATGAAGCTCGTGGTGAAGTAATAATCTATCTAGAC
GCTCACTGTGAAGTAAATAAAAACTGGTTAGTTCCGCTCATTGCACCAATTGCTCTTGAT
GACAAAGTCATGACTGTTCCAATAATTGATGGAATCGATCATAAAAATTTTGAATATCGA
CCAGTTTATGCTGAAGGTCATAATTTTAGAGGTATTTTTGAATGGGGTTTGCTGTATAAA
GAAAATGAGCTGCCAAAAAGGGAGGAAAAGAAAAGAGCACACAGTACTGAGCCTTATGAT
TCACCAACTCATGCTGGTGGTCTGTTTGCTATTAATCGAAAGTATTTCTTAGAATTAGGC
ACTTATGACCCAGGCCTTCTAGTCTGGGGAGGAGAAAATTTCGAGCTTAGTTTCAAAATT
TGGCAATGCGGTGGCAAAATTAAATGGGTTCCATGTTCTCGAATTGGTCATGTCTATCGT
GGTTTTATGCCTTACAATTTTGGTAAACTTGGTGAGAAGAAAAAAGGTCCATTGATAACC
ATCAATTATAAAAGAGTTGTTGAAGTTTGGATGGATGAGCAACACAAAGAATATTTTTAT
ACACGTGAACCAAGTGCAAAATATTTAGAAATGGGTGACATAAGTGAGCAATTGGCACTC
AAAGAAAAATTAAATTGTAAAAGTTTCAGTTGGTTTATGGAAAATGTCGCTTATGATGTT
TATGACAAATATCCGCAATTACCTGAAAATACAAATTGGGGTGAACTCATAAATTCAGCA
ACAATGAAATGTTTTGATGCAATGGGAAGACAACCACCGAGTTATATTTCATTGCAACCA
TGTCATGGCTATGGAAATAATCAATTAATTCGTCTCAATGCAGCTGGTCAACTTGGAATT
GGTGAAAGATGCGTTGAAGCTGATGCAAATGGAATTAAACTTGCATTTTGTCGTCTTGGA
ACTGTTGATGGACCTTGGAAATATACAGAAGCAAAAACACTTTACCATCGAACACAGAAA
AAATGCATTGCAGTTCATCCTGTTACATCACAACTTTCACTTATGCCATGTGATGTCAAT
AATAGCTATCAATTATGGATTTTTAAAATTCTTAAACCAAGAAAATAA
>g17337.t1 Gene=g17337 Length=575
MKIAMRRGRIIRITLGLSIIPLLYLLFTYSESHKKFNEIYSKKLVSKIREPFLASEGYGN
FEPIDKEVHHGPGEGGLPYIHEGSNSDDSEIEYGMNMFISDKISLNRTIRDTRPKECKKW
NYPEELPSVSVIIVFHNEGFSVLMRTVHSVINRSPQQYLEEILLVDDFSDKNDLKEKLDN
YVERFNGKVRVIRNVEREGLIRTRSRGAHEARGEVIIYLDAHCEVNKNWLVPLIAPIALD
DKVMTVPIIDGIDHKNFEYRPVYAEGHNFRGIFEWGLLYKENELPKREEKKRAHSTEPYD
SPTHAGGLFAINRKYFLELGTYDPGLLVWGGENFELSFKIWQCGGKIKWVPCSRIGHVYR
GFMPYNFGKLGEKKKGPLITINYKRVVEVWMDEQHKEYFYTREPSAKYLEMGDISEQLAL
KEKLNCKSFSWFMENVAYDVYDKYPQLPENTNWGELINSATMKCFDAMGRQPPSYISLQP
CHGYGNNQLIRLNAAGQLGIGERCVEADANGIKLAFCRLGTVDGPWKYTEAKTLYHRTQK
KCIAVHPVTSQLSLMPCDVNNSYQLWIFKILKPRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g17337.t1 | CDD | cd02510 | pp-GalNAc-T | 130 | 437 | 3.95608E-169 |
| 14 | g17337.t1 | CDD | cd00161 | RICIN | 463 | 568 | 2.70208E-16 |
| 8 | g17337.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 60 | 447 | 3.4E-157 |
| 7 | g17337.t1 | Gene3D | G3DSA:2.80.10.50 | - | 449 | 572 | 1.1E-21 |
| 3 | g17337.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 11 | 567 | 1.5E-229 |
| 4 | g17337.t1 | PANTHER | PTHR11675:SF68 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE | 11 | 567 | 1.5E-229 |
| 2 | g17337.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 130 | 316 | 8.7E-30 |
| 1 | g17337.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 453 | 566 | 3.0E-17 |
| 10 | g17337.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 32 | - |
| 11 | g17337.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 14 | - |
| 12 | g17337.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 15 | 27 | - |
| 13 | g17337.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 28 | 32 | - |
| 9 | g17337.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 33 | 575 | - |
| 18 | g17337.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 463 | 569 | 13.783 |
| 17 | g17337.t1 | SMART | SM00458 | ricin_3 | 452 | 569 | 8.1E-12 |
| 6 | g17337.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 106 | 439 | 1.58E-60 |
| 5 | g17337.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 445 | 568 | 1.75E-24 |
| 16 | g17337.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 30 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K00710 (polypeptide N-acetylgalactosaminyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
