General information for g17337.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetylgalactosaminyltransferase 7.
Parent gene
- The parent gene g17337 is located on chr_4: 13190516..13192345 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17337 | g17337.t3 | TTS | g17337.t3 | 13189397 | 13189397 |
| chr_4 | g17337 | g17337.t3 | isoform | g17337.t3 | 13189411 | 13190163 |
| chr_4 | g17337 | g17337.t3 | exon | g17337.t3.exon1 | 13189411 | 13190163 |
| chr_4 | g17337 | g17337.t3 | cds | g17337.t3.CDS1 | 13189411 | 13190052 |
| chr_4 | g17337 | g17337.t3 | TSS | g17337.t3 | NA | NA |
Sequences
>g17337.t3 Gene=g17337 Length=753
CTTCTAGTCTGGGGAGGAGAAAATTTCGAGCTTAGTTTCAAAATTTGGCAATGCGGTGGC
AAAATTAAATGGGTTCCATGTTCTCGAATTGGTCATGTCTATCGTGGTTTTATGCCTTAC
AATTTTGGTAAACTTGGTGAGAAGAAAAAAGGTCCATTGATAACCATCAATTATAAAAGA
GTTGTTGAAGTTTGGATGGATGAGCAACACAAAGAATATTTTTATACACGTGAACCAAGT
GCAAAATATTTAGAAATGGGTGACATAAGTGAGCAATTGGCACTCAAAGAAAAATTAAAT
TGTAAAAGTTTCAGTTGGTTTATGGAAAATGTCGCTTATGATGTTTATGACAAATATCCG
CAATTACCTGAAAATACAAATTGGGGTGAACTCATAAATTCAGCAACAATGAAATGTTTT
GATGCAATGGGAAGACAACCACCGAGTTATATTTCATTGCAACCATGTCATGGCTATGGA
AATAATCAATTAATTCGTCTCAATGCAGCTGGTCAACTTGGAATTGGTGAAAGATGCGTT
GAAGCTGATGCAAATGGAATTAAACTTGCATTTTGTCGTCTTGGAACTGTTGATGGACCT
TGGAAATATACAGAAGCAAAAACACTTTACCATCGAACACAGAAAAAATGCATTGCAGTT
CATCCTGTTACATCACAACTTTCACTTATGCCATGTGATGTCAATAATAGCTATCAATTA
TGGATTTTTAAAATTCTTAAACCAAGAAAATAA
>g17337.t3 Gene=g17337 Length=213
MPYNFGKLGEKKKGPLITINYKRVVEVWMDEQHKEYFYTREPSAKYLEMGDISEQLALKE
KLNCKSFSWFMENVAYDVYDKYPQLPENTNWGELINSATMKCFDAMGRQPPSYISLQPCH
GYGNNQLIRLNAAGQLGIGERCVEADANGIKLAFCRLGTVDGPWKYTEAKTLYHRTQKKC
IAVHPVTSQLSLMPCDVNNSYQLWIFKILKPRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g17337.t3 | CDD | cd00161 | RICIN | 101 | 206 | 0.000 |
| 7 | g17337.t3 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 85 | 0.000 |
| 6 | g17337.t3 | Gene3D | G3DSA:2.80.10.50 | - | 87 | 210 | 0.000 |
| 2 | g17337.t3 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 1 | 205 | 0.000 |
| 3 | g17337.t3 | PANTHER | PTHR11675:SF68 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE | 1 | 205 | 0.000 |
| 1 | g17337.t3 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 91 | 204 | 0.000 |
| 8 | g17337.t3 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 101 | 207 | 13.783 |
| 5 | g17337.t3 | SMART | SM00458 | ricin_3 | 90 | 207 | 0.000 |
| 4 | g17337.t3 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 83 | 206 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
