General information for g17337.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetylgalactosaminyltransferase 7.
Parent gene
- The parent gene g17337 is located on chr_4: 13190516..13192345 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17337 | g17337.t4 | TTS | g17337.t4 | 13189397 | 13189397 |
| chr_4 | g17337 | g17337.t4 | isoform | g17337.t4 | 13189411 | 13192345 |
| chr_4 | g17337 | g17337.t4 | exon | g17337.t4.exon1 | 13189411 | 13189655 |
| chr_4 | g17337 | g17337.t4 | cds | g17337.t4.CDS1 | 13189413 | 13189655 |
| chr_4 | g17337 | g17337.t4 | exon | g17337.t4.exon2 | 13189747 | 13190164 |
| chr_4 | g17337 | g17337.t4 | cds | g17337.t4.CDS2 | 13189747 | 13190164 |
| chr_4 | g17337 | g17337.t4 | exon | g17337.t4.exon3 | 13190503 | 13190859 |
| chr_4 | g17337 | g17337.t4 | cds | g17337.t4.CDS3 | 13190503 | 13190859 |
| chr_4 | g17337 | g17337.t4 | exon | g17337.t4.exon4 | 13191173 | 13191572 |
| chr_4 | g17337 | g17337.t4 | cds | g17337.t4.CDS4 | 13191173 | 13191572 |
| chr_4 | g17337 | g17337.t4 | exon | g17337.t4.exon5 | 13191875 | 13191922 |
| chr_4 | g17337 | g17337.t4 | cds | g17337.t4.CDS5 | 13191875 | 13191922 |
| chr_4 | g17337 | g17337.t4 | exon | g17337.t4.exon6 | 13192177 | 13192345 |
| chr_4 | g17337 | g17337.t4 | cds | g17337.t4.CDS6 | 13192177 | 13192345 |
| chr_4 | g17337 | g17337.t4 | TSS | g17337.t4 | 13192589 | 13192589 |
Sequences
>g17337.t4 Gene=g17337 Length=1637
ATGAAAATTGCAATGAGAAGAGGAAGAATTATTCGAATAACTTTGGGATTATCGATAATT
CCATTGTTATATTTACTTTTCACATATTCTGAATCGCACAAAAAATTCAATGAAATTTAC
AGTAAGAAATTAGTGTCGAAAATTAGAGAACCGTTTTTGGCAAGTGAAGGATATGGAAAT
TTTGAGCCGATCGATAAAGAAGTTCATCATGGGCCAGGTGAAGGTGGTCTTCCGTATATC
CACGAAGGATCAAATTCCGACGACTCAGAAATTGAATATGGCATGAATATGTTTATATCT
GATAAAATTTCATTAAATCGAACAATCAGAGACACACGACCAAAAGAATGTAAAAAATGG
AATTATCCTGAAGAATTGCCAAGTGTCAGTGTTATAATTGTCTTTCATAATGAAGGATTT
TCAGTTTTAATGCGCACAGTTCATAGTGTTATTAATAGAAGTCCACAGCAGTATTTAGAA
GAAATTTTATTGGTTGATGATTTTAGCGATAAAAATGATCTCAAAGAGAAATTAGACAAT
TATGTGGAGAGATTTAATGGAAAAGTGAGGGTCATTAGAAATGTTGAAAGAGAAGGATTG
ATTAGAACTAGATCAAGAGGTGCCCATGAAGCTCGTGGTGAAGTAATAATCTATCTAGAC
GCTCACTGTGAAGTAAATAAAAACTGGTTAGTTCCGCTCATTGCACCAATTGCTCTTGAT
GACAAAGTCATGACTGTTCCAATAATTGATGGAATCGATCATAAAAATTTTGAATATCGA
CCAGTTTATGCTGAAGGTCATAATTTTAGAGGTATTTTTGAATGGGGTTTGCTGTATAAA
GAAAATGAGCTGCCAAAAAGGGAGGAAAAGAAAAGAGCACACAGTACTGAGCCTTATGAT
TCACCAACTCATGCTGGTGGTCTGTTTGCTATTAATCGAAAGTATTTCTTAGAATTAGGC
ACTTATGACCCAGGCCTTCTAGTCTGGGGAGGAGAAAATTTCGAGCTTAGTTTCAAAATT
TGGCAATGCGGTGGCAAAATTAAATGGGTTCCATGTTCTCGAATTGGTCATGTCTATCGT
GGTTTTATGCCTTACAATTTTGGTAAACTTGGTGAGAAGAAAAAAGGTCCATTGATAACC
ATCAATTATAAAAGAGTTGTTGAAGTTTGGATGGATGAGCAACACAAAGAATATTTTTAT
ACACGTGAACCAAGTGCAAAATATTTAGAAATGGGTGACATAAGTGAGCAATTGGCACTC
AAAGAAAAATTAAATTGTAAAAGTTTCAGTTGGTTTATGGAAAATGTCGCTTATGATGTT
TATGACAAATATCCGCAATTACCTGAAAATACAAATTGGGGTGAACTCATAAATTCAGCA
ACAATGAAATGTCTGGTCAACTTGGAATTGGTGAAAGATGCGTTGAAGCTGATGCAAATG
GAATTAAACTTGCATTTTGTCGTCTTGGAACTGTTGATGGACCTTGGAAATATACAGAAG
CAAAAACACTTTACCATCGAACACAGAAAAAATGCATTGCAGTTCATCCTGTTACATCAC
AACTTTCACTTATGCCATGTGATGTCAATAATAGCTATCAATTATGGATTTTTAAAATTC
TTAAACCAAGAAAATAA
>g17337.t4 Gene=g17337 Length=545
MKIAMRRGRIIRITLGLSIIPLLYLLFTYSESHKKFNEIYSKKLVSKIREPFLASEGYGN
FEPIDKEVHHGPGEGGLPYIHEGSNSDDSEIEYGMNMFISDKISLNRTIRDTRPKECKKW
NYPEELPSVSVIIVFHNEGFSVLMRTVHSVINRSPQQYLEEILLVDDFSDKNDLKEKLDN
YVERFNGKVRVIRNVEREGLIRTRSRGAHEARGEVIIYLDAHCEVNKNWLVPLIAPIALD
DKVMTVPIIDGIDHKNFEYRPVYAEGHNFRGIFEWGLLYKENELPKREEKKRAHSTEPYD
SPTHAGGLFAINRKYFLELGTYDPGLLVWGGENFELSFKIWQCGGKIKWVPCSRIGHVYR
GFMPYNFGKLGEKKKGPLITINYKRVVEVWMDEQHKEYFYTREPSAKYLEMGDISEQLAL
KEKLNCKSFSWFMENVAYDVYDKYPQLPENTNWGELINSATMKCLVNLELVKDALKLMQM
ELNLHFVVLELLMDLGNIQKQKHFTIEHRKNALQFILLHHNFHLCHVMSIIAINYGFLKF
LNQEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g17337.t4 | CDD | cd02510 | pp-GalNAc-T | 130 | 437 | 3.61899E-168 |
| 6 | g17337.t4 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 60 | 447 | 2.9E-157 |
| 2 | g17337.t4 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 11 | 465 | 2.9E-203 |
| 3 | g17337.t4 | PANTHER | PTHR11675:SF68 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE | 11 | 465 | 2.9E-203 |
| 1 | g17337.t4 | Pfam | PF00535 | Glycosyl transferase family 2 | 130 | 316 | 7.8E-30 |
| 8 | g17337.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 32 | - |
| 9 | g17337.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 14 | - |
| 10 | g17337.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 15 | 27 | - |
| 11 | g17337.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 28 | 32 | - |
| 7 | g17337.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 33 | 545 | - |
| 5 | g17337.t4 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 106 | 439 | 1.35E-60 |
| 4 | g17337.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 30 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed