General information for g17429.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17429 is located on chr_4: 13489593..13493317 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17429 | g17429.t1 | TSS | g17429.t1 | 13489571 | 13489571 |
| chr_4 | g17429 | g17429.t1 | isoform | g17429.t1 | 13489593 | 13493317 |
| chr_4 | g17429 | g17429.t1 | exon | g17429.t1.exon1 | 13489593 | 13489836 |
| chr_4 | g17429 | g17429.t1 | cds | g17429.t1.CDS1 | 13489593 | 13489836 |
| chr_4 | g17429 | g17429.t1 | exon | g17429.t1.exon2 | 13489936 | 13490703 |
| chr_4 | g17429 | g17429.t1 | cds | g17429.t1.CDS2 | 13489936 | 13490703 |
| chr_4 | g17429 | g17429.t1 | exon | g17429.t1.exon3 | 13490863 | 13491630 |
| chr_4 | g17429 | g17429.t1 | cds | g17429.t1.CDS3 | 13490863 | 13491630 |
| chr_4 | g17429 | g17429.t1 | exon | g17429.t1.exon4 | 13491703 | 13492488 |
| chr_4 | g17429 | g17429.t1 | cds | g17429.t1.CDS4 | 13491703 | 13492488 |
| chr_4 | g17429 | g17429.t1 | exon | g17429.t1.exon5 | 13492656 | 13493317 |
| chr_4 | g17429 | g17429.t1 | cds | g17429.t1.CDS5 | 13492656 | 13493317 |
| chr_4 | g17429 | g17429.t1 | TTS | g17429.t1 | NA | NA |
Sequences
>g17429.t1 Gene=g17429 Length=3228
ATGAAGCATTTGCAATCGTTTGTTTTTGTGATTATTTCTCTAATCACATTGAGTCATGGA
CGTGAGATACAAAAATCATGTGATTCCAATTTTAGCTGCAATTTTGAAATAACTAACAAT
AAAAATATTTTTGATGATGATGAAAGTTTTATTAAATGCAATTATATATTCAGTGGACCA
GATTTATATTGTGACTTACAAATTTTAAATCGAGAAGGTCGTGATGATTTTGAAAGAATT
GAAGGTACTCTTCCACCTCTATTTAGATATGATGACGTCGAAAGTATTTTTAGCATAGGA
CAATTTTCATTGAATTTTCCATCAATAATCTGTCGTCAATTCAACAACCTAAAAAGCATC
ATAATGTATTTTGGAATTATTCAAATCATTGATCGTAATTCATTTGAAAATTGTCGAAAT
TTGGTCGAATTGAGGCTTGATTTTAATGCAATTTTCTACATTGCTGGTGATTCATTCATA
AATTTATCCAAATTGAATTCACTCTTTTTGGGAAATAATGATTTTTCATATTTGAGGCCT
GGAATGTTCAATGGAATTGAAAATTCACTTTTGATTCTTAACTTAAACCATAATTTTATT
TCATCGATAGAATTTGGATTTTTTGATGAATTTCAAATGTTAAAAGAAATTAATTTTTCC
AACAATAATTTAACAACAATCGATTTGAGATCTTTTGGAAATTCAGTGAATTCTTTAGAA
ATTTTTCAAGCAGAAAATAATCGTATTTTTTTTATTGACAATCAATGGTTTGATAACGCA
ATATTTCTGGATAAATTACAACTTGATAACAATCTTTGTATAAATGAATCATTTTATGAT
GTTGGATTAAATAGAGAAGCAGTCAGAAGACAATTAGAACAATGTTTTGAGAATTTTATT
AATCCACCTGATTTTATTAGATGTGAATATTATTTAAATGATGATGGAAAAATTGAATGT
GAATTGTTTATTAATAATCCAAATGGTCGAGATGATTTCACTGAAATTGAAGGTGAGCTT
CCTTCAAACAAAACATTTGCTGATGTAGTCACAGTTTATATGGAATCTCAACAAACGTCA
ATAATTCCTTCAATTTTATGCAATTCTTTTCCTTATTTATCATTTTTTGGAGCAATGGCA
TCAGGAATACTTGAAATAACTTCAACGTCAATTAAAAACTGCAGAAATCTGACAGCATTC
TATATATTCTTAGAATTCTTGCAAAATATACCTGAAGATCTTTTTGTAAATCAACCACAG
TTAATTGATGTTATAATTGAATTTACTTCAATTGGAAATATTCCATCACGTCTTTTTGAG
ACTAATTATGAACTTCATGAAGTTCATTTAGGATATAATTACCTTTCTGAAATACCTTTT
GGACTTTTTGTTAATAATCAAAATTTGCAAGTTTTGTCTTTTGAAGTAAATCAAATAGAA
GTCATTGACTCACGTTCATTCGGTTCATTAAATGATTTGCTTTCATTTGGTGCTTATGAT
AATCAAATTTTTGCAATTGACAGTAAATGGTTTGATTTTATACCTAACATTGATACATTA
ATTTTTACTAACAACATTTGTGTTGATAAAAGTTTTTCGTCCATTAATGAAAATAGGGAA
GAAGTCAAAAGACAATTAGAGCAATGTTTTGAGAATTTTATTAATCCTCCTGAAAGAGAT
TTCATAAGATGTGAATATTATTTACGTGATGATGGAAAAATTGAATGTGAATTGTTGATA
AACAATCCAAAAGGAAGAGATGTTTTTACTGAAATTGAAGGTGAATTCCCTTCAAACAAA
ACATTTGCTGACGTAGTCACAGTTTTCATAGGATTTCAACAAACTCCAATAATTCCTTCA
ATAATTTGTCAGTCCTACCCTAATTTAATATTTTTAGGAACTATGGCATCAGGAATACTT
GAAATATCTTCAACGTCAATTCAAAACTGCAGATATCTGACTTCATTTTATATTTTTTTA
GACTTCTTGCAAAATCTTCCTGAAGATCTTTTTGCAAATCAAGAACAATTATTTGATGTT
ATTTTTACATTAACTTTAATTGAACATATTCCGGCACGTCTTTTTGAGACAAATTTTGAA
CTTCAAGAAGTTTATTTTGGATATAATCAATTGACTGAAATAACATTTGGTTTATTTGCT
AACAATCAAAACTTAAAAGTTTTATCTTTTGAAGAAAATCAAATTGAAGTCATTGATTCA
CGTTCATTCCGTTCATTAAATGATTTAATTTTGTTTGATGCAAATAAAAATAAAATTTTT
GCTATTGACAGTCAATGGTTTGATTTAATATCTAATGTTGATCAATTACTTTTCACTAAC
AACATTTGCATTGATGAAATATTTTATGATGTTGGATTAAACAGAGAAGAAGTCAGAAGA
CAATTAGAACAATGTTTTGAGAATTTTAATAATCCGCCTGAAACTACAACAATACCTCAA
AGAGAATTTATAGAATGTGATTATTATTTGAAATTTGATGATAGTGTTGGATGTAATTTG
CTCATAAATAATCCAAATGGTCGAGATGATTTTATTGAAATTGAAGGTGAACTTCCATCA
AATAAAACAATTGCAGATGTTAAGGAGCTTTATATAGTACATCAAAATTCTCCATTAATT
CCTTCAATCATTTGTCAATTTTTCCCTAATTTGATTACTTTTGGAATTATGAATTTAGGA
TTAAAAGAACTTTCTTCAACATCAATTGAAAAATGTGAAATTTTAACAACATTTAATCTT
TATTTTGAAATTATAAAGAGAGTTCCTGAAGATTTATTTGTAAATCATTCACAGTTGTAT
GAAATTATATTTGGATTTACAGAAATTGAAGAACTTCCAGGAAAACTTTTTGAAAAAAAT
CCCATATTAAGAAATGTTTATCTTGGAAATAATCAACTGACTGAATTGCCATTTGGATTA
TTTACTAATAATCCGAATTTAAGAATTTTAACTTTTGAAGGAAATCAAATTGAAGTCATT
GATTCACGCACTTTTCAACCCTTTAGTAATTTGTTTGTATTTGATGCAAGTGATAACAAA
ATTAATGCAATTGATAGTCAATGGTTTGATTTTTCTGAACAACTTGATCAATTGTTTTTT
GCTAATAATATTTGTATTGATGTTATGTTTACTCACACTGGATTACATAGGGAAGAATTT
AGAAGAGCTTTTGAAAATTGCTTTGAAAATTTTGAGAATTTAAATTAA
>g17429.t1 Gene=g17429 Length=1075
MKHLQSFVFVIISLITLSHGREIQKSCDSNFSCNFEITNNKNIFDDDESFIKCNYIFSGP
DLYCDLQILNREGRDDFERIEGTLPPLFRYDDVESIFSIGQFSLNFPSIICRQFNNLKSI
IMYFGIIQIIDRNSFENCRNLVELRLDFNAIFYIAGDSFINLSKLNSLFLGNNDFSYLRP
GMFNGIENSLLILNLNHNFISSIEFGFFDEFQMLKEINFSNNNLTTIDLRSFGNSVNSLE
IFQAENNRIFFIDNQWFDNAIFLDKLQLDNNLCINESFYDVGLNREAVRRQLEQCFENFI
NPPDFIRCEYYLNDDGKIECELFINNPNGRDDFTEIEGELPSNKTFADVVTVYMESQQTS
IIPSILCNSFPYLSFFGAMASGILEITSTSIKNCRNLTAFYIFLEFLQNIPEDLFVNQPQ
LIDVIIEFTSIGNIPSRLFETNYELHEVHLGYNYLSEIPFGLFVNNQNLQVLSFEVNQIE
VIDSRSFGSLNDLLSFGAYDNQIFAIDSKWFDFIPNIDTLIFTNNICVDKSFSSINENRE
EVKRQLEQCFENFINPPERDFIRCEYYLRDDGKIECELLINNPKGRDVFTEIEGEFPSNK
TFADVVTVFIGFQQTPIIPSIICQSYPNLIFLGTMASGILEISSTSIQNCRYLTSFYIFL
DFLQNLPEDLFANQEQLFDVIFTLTLIEHIPARLFETNFELQEVYFGYNQLTEITFGLFA
NNQNLKVLSFEENQIEVIDSRSFRSLNDLILFDANKNKIFAIDSQWFDLISNVDQLLFTN
NICIDEIFYDVGLNREEVRRQLEQCFENFNNPPETTTIPQREFIECDYYLKFDDSVGCNL
LINNPNGRDDFIEIEGELPSNKTIADVKELYIVHQNSPLIPSIICQFFPNLITFGIMNLG
LKELSSTSIEKCEILTTFNLYFEIIKRVPEDLFVNHSQLYEIIFGFTEIEELPGKLFEKN
PILRNVYLGNNQLTELPFGLFTNNPNLRILTFEGNQIEVIDSRTFQPFSNLFVFDASDNK
INAIDSQWFDFSEQLDQLFFANNICIDVMFTHTGLHREEFRRAFENCFENFENLN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 30 | g17429.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 84 | 287 | 2.9E-23 |
| 31 | g17429.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 343 | 557 | 1.9E-21 |
| 32 | g17429.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 585 | 799 | 1.8E-18 |
| 29 | g17429.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 852 | 1059 | 1.1E-26 |
| 8 | g17429.t1 | PANTHER | PTHR46473:SF10 | GH08155P | 116 | 231 | 4.9E-66 |
| 12 | g17429.t1 | PANTHER | PTHR46473 | GH08155P | 116 | 231 | 4.9E-66 |
| 7 | g17429.t1 | PANTHER | PTHR46473:SF10 | GH08155P | 350 | 527 | 4.9E-66 |
| 11 | g17429.t1 | PANTHER | PTHR46473 | GH08155P | 350 | 527 | 4.9E-66 |
| 5 | g17429.t1 | PANTHER | PTHR46473:SF10 | GH08155P | 613 | 811 | 4.9E-66 |
| 9 | g17429.t1 | PANTHER | PTHR46473 | GH08155P | 613 | 811 | 4.9E-66 |
| 6 | g17429.t1 | PANTHER | PTHR46473:SF10 | GH08155P | 881 | 1073 | 4.9E-66 |
| 10 | g17429.t1 | PANTHER | PTHR46473 | GH08155P | 881 | 1073 | 4.9E-66 |
| 4 | g17429.t1 | Pfam | PF13855 | Leucine rich repeat | 139 | 188 | 5.5E-7 |
| 3 | g17429.t1 | Pfam | PF13855 | Leucine rich repeat | 444 | 498 | 9.4E-7 |
| 2 | g17429.t1 | Pfam | PF13855 | Leucine rich repeat | 700 | 759 | 4.7E-7 |
| 1 | g17429.t1 | Pfam | PF13855 | Leucine rich repeat | 985 | 1043 | 8.1E-7 |
| 34 | g17429.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 35 | g17429.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 36 | g17429.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 37 | g17429.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 33 | g17429.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 1075 | - |
| 22 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 138 | 161 | 140.0 |
| 23 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 162 | 185 | 0.049 |
| 18 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 189 | 210 | 210.0 |
| 24 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 211 | 234 | 15.0 |
| 26 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 236 | 259 | 310.0 |
| 17 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 443 | 465 | 100.0 |
| 27 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 467 | 489 | 150.0 |
| 16 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 700 | 721 | 94.0 |
| 19 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 723 | 745 | 54.0 |
| 25 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 961 | 983 | 15.0 |
| 21 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 985 | 1007 | 14.0 |
| 20 | g17429.t1 | SMART | SM00369 | LRR_typ_2 | 1008 | 1031 | 220.0 |
| 15 | g17429.t1 | SUPERFAMILY | SSF52058 | L domain-like | 106 | 272 | 2.47E-24 |
| 14 | g17429.t1 | SUPERFAMILY | SSF52058 | L domain-like | 380 | 1046 | 6.38E-32 |
| 13 | g17429.t1 | SUPERFAMILY | SSF52058 | L domain-like | 609 | 784 | 1.59E-19 |
| 28 | g17429.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed