General information for g17429.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17429 is located on chr_4: 13489593..13493317 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17429 | g17429.t2 | TSS | g17429.t2 | 13489571 | 13489571 |
| chr_4 | g17429 | g17429.t2 | isoform | g17429.t2 | 13489593 | 13492488 |
| chr_4 | g17429 | g17429.t2 | exon | g17429.t2.exon1 | 13489593 | 13489836 |
| chr_4 | g17429 | g17429.t2 | cds | g17429.t2.CDS1 | 13489593 | 13489836 |
| chr_4 | g17429 | g17429.t2 | exon | g17429.t2.exon2 | 13489936 | 13490703 |
| chr_4 | g17429 | g17429.t2 | cds | g17429.t2.CDS2 | 13489936 | 13490703 |
| chr_4 | g17429 | g17429.t2 | exon | g17429.t2.exon3 | 13490863 | 13491630 |
| chr_4 | g17429 | g17429.t2 | cds | g17429.t2.CDS3 | 13490863 | 13491630 |
| chr_4 | g17429 | g17429.t2 | exon | g17429.t2.exon4 | 13491703 | 13491959 |
| chr_4 | g17429 | g17429.t2 | cds | g17429.t2.CDS4 | 13491703 | 13491959 |
| chr_4 | g17429 | g17429.t2 | exon | g17429.t2.exon5 | 13492011 | 13492488 |
| chr_4 | g17429 | g17429.t2 | cds | g17429.t2.CDS5 | 13492011 | 13492487 |
| chr_4 | g17429 | g17429.t2 | TTS | g17429.t2 | NA | NA |
Sequences
>g17429.t2 Gene=g17429 Length=2515
ATGAAGCATTTGCAATCGTTTGTTTTTGTGATTATTTCTCTAATCACATTGAGTCATGGA
CGTGAGATACAAAAATCATGTGATTCCAATTTTAGCTGCAATTTTGAAATAACTAACAAT
AAAAATATTTTTGATGATGATGAAAGTTTTATTAAATGCAATTATATATTCAGTGGACCA
GATTTATATTGTGACTTACAAATTTTAAATCGAGAAGGTCGTGATGATTTTGAAAGAATT
GAAGGTACTCTTCCACCTCTATTTAGATATGATGACGTCGAAAGTATTTTTAGCATAGGA
CAATTTTCATTGAATTTTCCATCAATAATCTGTCGTCAATTCAACAACCTAAAAAGCATC
ATAATGTATTTTGGAATTATTCAAATCATTGATCGTAATTCATTTGAAAATTGTCGAAAT
TTGGTCGAATTGAGGCTTGATTTTAATGCAATTTTCTACATTGCTGGTGATTCATTCATA
AATTTATCCAAATTGAATTCACTCTTTTTGGGAAATAATGATTTTTCATATTTGAGGCCT
GGAATGTTCAATGGAATTGAAAATTCACTTTTGATTCTTAACTTAAACCATAATTTTATT
TCATCGATAGAATTTGGATTTTTTGATGAATTTCAAATGTTAAAAGAAATTAATTTTTCC
AACAATAATTTAACAACAATCGATTTGAGATCTTTTGGAAATTCAGTGAATTCTTTAGAA
ATTTTTCAAGCAGAAAATAATCGTATTTTTTTTATTGACAATCAATGGTTTGATAACGCA
ATATTTCTGGATAAATTACAACTTGATAACAATCTTTGTATAAATGAATCATTTTATGAT
GTTGGATTAAATAGAGAAGCAGTCAGAAGACAATTAGAACAATGTTTTGAGAATTTTATT
AATCCACCTGATTTTATTAGATGTGAATATTATTTAAATGATGATGGAAAAATTGAATGT
GAATTGTTTATTAATAATCCAAATGGTCGAGATGATTTCACTGAAATTGAAGGTGAGCTT
CCTTCAAACAAAACATTTGCTGATGTAGTCACAGTTTATATGGAATCTCAACAAACGTCA
ATAATTCCTTCAATTTTATGCAATTCTTTTCCTTATTTATCATTTTTTGGAGCAATGGCA
TCAGGAATACTTGAAATAACTTCAACGTCAATTAAAAACTGCAGAAATCTGACAGCATTC
TATATATTCTTAGAATTCTTGCAAAATATACCTGAAGATCTTTTTGTAAATCAACCACAG
TTAATTGATGTTATAATTGAATTTACTTCAATTGGAAATATTCCATCACGTCTTTTTGAG
ACTAATTATGAACTTCATGAAGTTCATTTAGGATATAATTACCTTTCTGAAATACCTTTT
GGACTTTTTGTTAATAATCAAAATTTGCAAGTTTTGTCTTTTGAAGTAAATCAAATAGAA
GTCATTGACTCACGTTCATTCGGTTCATTAAATGATTTGCTTTCATTTGGTGCTTATGAT
AATCAAATTTTTGCAATTGACAGTAAATGGTTTGATTTTATACCTAACATTGATACATTA
ATTTTTACTAACAACATTTGTGTTGATAAAAGTTTTTCGTCCATTAATGAAAATAGGGAA
GAAGTCAAAAGACAATTAGAGCAATGTTTTGAGAATTTTATTAATCCTCCTGAAAGAGAT
TTCATAAGATGTGAATATTATTTACGTGATGATGGAAAAATTGAATGTGAATTGTTGATA
AACAATCCAAAAGGAAGAGATGTTTTTACTGAAATTGAAGGTGAATTCCCTTCAAACAAA
ACATTTGCTGACGTAGTCACAGTTTTCATAGGATTTCAACAAACTCCAATAATTCCTTCA
ATAATTTGTCAGTCCTACCCTAATTTAATATTTTTAGGAACTATGGCATCAGGAATACTT
GAAATATCTTCAACGTCAATTCAAAACTGCAGATATCTGACTTCATTTTATATTTTTTTA
GACTTCTTGCAAAATCTTCCTGAAGATCTTTTTGCAAATCAAGAACAATTATTTGATACA
AATTTTGAACTTCAAGAAGTTTATTTTGGATATAATCAATTGACTGAAATAACATTTGGT
TTATTTGCTAACAATCAAAACTTAAAAGTTTTATCTTTTGAAGAAAATCAAATTGAAGTC
ATTGATTCACGTTCATTCCGTTCATTAAATGATTTAATTTTGTTTGATGCAAATAAAAAT
AAAATTTTTGCTATTGACAGTCAATGGTTTGATTTAATATCTAATGTTGATCAATTACTT
TTCACTAACAACATTTGCATTGATGAAATATTTTATGATGTTGGATTAAACAGAGAAGAA
GTCAGAAGACAATTAGAACAATGTTTTGAGAATTTTAATAATCCGCCTGAAACTACAACA
ATACCTCAAAGAGAATTTATAGAATGTGATTATTATTTGAAATTTGATGATAGTGTTGGA
TGTAATTTGCTCATAAATAATCCAAATGGTCGAGATGATTTTATTGAAATTGAAG
>g17429.t2 Gene=g17429 Length=838
MKHLQSFVFVIISLITLSHGREIQKSCDSNFSCNFEITNNKNIFDDDESFIKCNYIFSGP
DLYCDLQILNREGRDDFERIEGTLPPLFRYDDVESIFSIGQFSLNFPSIICRQFNNLKSI
IMYFGIIQIIDRNSFENCRNLVELRLDFNAIFYIAGDSFINLSKLNSLFLGNNDFSYLRP
GMFNGIENSLLILNLNHNFISSIEFGFFDEFQMLKEINFSNNNLTTIDLRSFGNSVNSLE
IFQAENNRIFFIDNQWFDNAIFLDKLQLDNNLCINESFYDVGLNREAVRRQLEQCFENFI
NPPDFIRCEYYLNDDGKIECELFINNPNGRDDFTEIEGELPSNKTFADVVTVYMESQQTS
IIPSILCNSFPYLSFFGAMASGILEITSTSIKNCRNLTAFYIFLEFLQNIPEDLFVNQPQ
LIDVIIEFTSIGNIPSRLFETNYELHEVHLGYNYLSEIPFGLFVNNQNLQVLSFEVNQIE
VIDSRSFGSLNDLLSFGAYDNQIFAIDSKWFDFIPNIDTLIFTNNICVDKSFSSINENRE
EVKRQLEQCFENFINPPERDFIRCEYYLRDDGKIECELLINNPKGRDVFTEIEGEFPSNK
TFADVVTVFIGFQQTPIIPSIICQSYPNLIFLGTMASGILEISSTSIQNCRYLTSFYIFL
DFLQNLPEDLFANQEQLFDTNFELQEVYFGYNQLTEITFGLFANNQNLKVLSFEENQIEV
IDSRSFRSLNDLILFDANKNKIFAIDSQWFDLISNVDQLLFTNNICIDEIFYDVGLNREE
VRRQLEQCFENFNNPPETTTIPQREFIECDYYLKFDDSVGCNLLINNPNGRDDFIEIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g17429.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 101 | 186 | 1.6E-10 |
| 24 | g17429.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 187 | 291 | 1.7E-10 |
| 25 | g17429.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 343 | 557 | 1.3E-21 |
| 22 | g17429.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 586 | 794 | 2.6E-16 |
| 6 | g17429.t2 | PANTHER | PTHR46473:SF10 | GH08155P | 116 | 231 | 3.3E-46 |
| 9 | g17429.t2 | PANTHER | PTHR46473 | GH08155P | 116 | 231 | 3.3E-46 |
| 5 | g17429.t2 | PANTHER | PTHR46473:SF10 | GH08155P | 350 | 531 | 3.3E-46 |
| 8 | g17429.t2 | PANTHER | PTHR46473 | GH08155P | 350 | 531 | 3.3E-46 |
| 4 | g17429.t2 | PANTHER | PTHR46473:SF10 | GH08155P | 637 | 794 | 3.3E-46 |
| 7 | g17429.t2 | PANTHER | PTHR46473 | GH08155P | 637 | 794 | 3.3E-46 |
| 2 | g17429.t2 | Pfam | PF13855 | Leucine rich repeat | 139 | 188 | 4.0E-7 |
| 3 | g17429.t2 | Pfam | PF13855 | Leucine rich repeat | 444 | 493 | 9.4E-7 |
| 1 | g17429.t2 | Pfam | PF13855 | Leucine rich repeat | 683 | 742 | 3.7E-7 |
| 27 | g17429.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 28 | g17429.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 29 | g17429.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 30 | g17429.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 26 | g17429.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 838 | - |
| 14 | g17429.t2 | SMART | SM00369 | LRR_typ_2 | 138 | 161 | 140.0 |
| 16 | g17429.t2 | SMART | SM00369 | LRR_typ_2 | 162 | 185 | 0.049 |
| 13 | g17429.t2 | SMART | SM00369 | LRR_typ_2 | 189 | 210 | 210.0 |
| 17 | g17429.t2 | SMART | SM00369 | LRR_typ_2 | 211 | 234 | 15.0 |
| 18 | g17429.t2 | SMART | SM00369 | LRR_typ_2 | 236 | 259 | 310.0 |
| 12 | g17429.t2 | SMART | SM00369 | LRR_typ_2 | 443 | 465 | 100.0 |
| 19 | g17429.t2 | SMART | SM00369 | LRR_typ_2 | 467 | 489 | 150.0 |
| 20 | g17429.t2 | SMART | SM00369 | LRR_typ_2 | 683 | 704 | 94.0 |
| 15 | g17429.t2 | SMART | SM00369 | LRR_typ_2 | 706 | 728 | 54.0 |
| 11 | g17429.t2 | SUPERFAMILY | SSF52058 | L domain-like | 106 | 272 | 2.21E-24 |
| 10 | g17429.t2 | SUPERFAMILY | SSF52058 | L domain-like | 343 | 768 | 1.4E-25 |
| 21 | g17429.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed