General information for g17430.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Leucine-rich repeat-containing G-protein coupled receptor 5.
Parent gene
- The parent gene g17430 is located on chr_4: 13493735..13499173 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17430 | g17430.t1 | TSS | g17430.t1 | 13493713 | 13493713 |
| chr_4 | g17430 | g17430.t1 | isoform | g17430.t1 | 13493735 | 13499173 |
| chr_4 | g17430 | g17430.t1 | exon | g17430.t1.exon1 | 13493735 | 13494521 |
| chr_4 | g17430 | g17430.t1 | cds | g17430.t1.CDS1 | 13493735 | 13494521 |
| chr_4 | g17430 | g17430.t1 | exon | g17430.t1.exon2 | 13494622 | 13495413 |
| chr_4 | g17430 | g17430.t1 | cds | g17430.t1.CDS2 | 13494622 | 13495413 |
| chr_4 | g17430 | g17430.t1 | exon | g17430.t1.exon3 | 13495472 | 13495563 |
| chr_4 | g17430 | g17430.t1 | cds | g17430.t1.CDS3 | 13495472 | 13495563 |
| chr_4 | g17430 | g17430.t1 | exon | g17430.t1.exon4 | 13495634 | 13496237 |
| chr_4 | g17430 | g17430.t1 | cds | g17430.t1.CDS4 | 13495634 | 13496237 |
| chr_4 | g17430 | g17430.t1 | exon | g17430.t1.exon5 | 13496298 | 13496324 |
| chr_4 | g17430 | g17430.t1 | cds | g17430.t1.CDS5 | 13496298 | 13496324 |
| chr_4 | g17430 | g17430.t1 | exon | g17430.t1.exon6 | 13496383 | 13497210 |
| chr_4 | g17430 | g17430.t1 | cds | g17430.t1.CDS6 | 13496383 | 13497210 |
| chr_4 | g17430 | g17430.t1 | exon | g17430.t1.exon7 | 13497268 | 13498590 |
| chr_4 | g17430 | g17430.t1 | cds | g17430.t1.CDS7 | 13497268 | 13498590 |
| chr_4 | g17430 | g17430.t1 | exon | g17430.t1.exon8 | 13498644 | 13499173 |
| chr_4 | g17430 | g17430.t1 | cds | g17430.t1.CDS8 | 13498644 | 13499173 |
| chr_4 | g17430 | g17430.t1 | TTS | g17430.t1 | 13499237 | 13499237 |
Sequences
>g17430.t1 Gene=g17430 Length=4983
ATGAAAACATTGCTATTATTTGCAGTGTTACAATTTTTAAACTTGTATGGTCAAGGTCAA
GAGATAAAACCACATTGTGATTATAGTCATCAGCTGTTTAATTATCAGTGTAATTTTACC
ATCAACAACATCAATAAACGTGATGATTTCGAGGATATTAGTGGAATTCATTTAAATTTC
ATGACTGACAATGATGTCACAAGTGTAATAGCTCATGAACAATATTCTGCATTGATTCCA
TCGATAATTTGTGATAAATTCAAAAATATACGTGATTTAACTTTCACAGCGAGTCATGTT
GAAATTCTGACGTCAAAAGCATTCCAAAATTGCAGAAACCTCCGAACTCTCGTCATTTTC
TCTAATCTTATCAGTGACTTACCAGAAAACCTCTTCAATATCAATCGTAATTTACGTTTT
CTAAATTTAGAGAAGAATTTACTCACAAAAATAGACTCAAAATCATTTAGCGCTGCAATA
AATTCAATTGATAATTTTGTTATATCTTTTAATCGCATTGAGGCAATTGACGAGAAGTTT
TTCGATAAAGCAACAAAATTAATGACATTTTGGACAGAAGGAAACAAATGTGTGAGTCAA
AATTTTTTCATTTGGAATTCTAATAGACATCAAGTTAGACAACAATTGAGAGAATGTTTT
GACCTCTTTGAAAGACCACAAACACCTGATGAAAGTTTTATAAGATGTACGTATGATATT
TGGTTTGAAATAGAATGCATTATGAGCATTTTTAATCCAAATGGGAGAGAATTTGATAGA
ATTGAAGGTGATCTTCCGGACGGTATTCTTCATCAAGATGTTTTAGTTGTTGATGTTTGG
CTTCAAAACACAACGAACATTCCATTGGTTATATGCGAAACGTTCACAAATCTAATCACT
CTTCATATTTCAAGTAGTGGTTTACGAACTCTCACGGTTGAAGCTTTAGAAAACTGTAGA
AATTTGAGAAGCGTTTGGTTTTCATTGAATCAAATCAGTGAAATTCCAGACGACCTTTTT
AGACATGCTACAAATTTACAAACTGTAATATTGAATAACAATCATATCACAAAAATTAAA
ATTGGAATGTTTACAAATTCTAATAGTCAACTACATACTGTGTGGCTTAGACAAAATGAA
ATCACTGAAATTGAAGATTTAGCTTTTGATGATTTACCTAGTTTTACTTCACTTGATGTC
TCTTTTAATAAATTAACAACAGTCAAATCGAGTTTCTTTGGTAATAGTTTAACTAGACTT
ACATTGTTTAGTGCTCAAAATAATATGATATCATCAATTGATCCTGAATGGTTTGATGGT
GCAATACAATTGGGAAATTTGAATCTTTCCAACAATATTTGTATTGATAATCTTGATGTT
TGGGATGTATCACATAATCGAACAGGAGTCAGAAATGAATTACAAAATTGTTTTGATAAT
TTTGAAAGTTCTCAAACGACAACTTTAATTCCTGACCTTGAAGTTATTCGATGTTATTAC
ACATTCTCAAATGAAATTGGTCATTGTATATTTTACATTTTAAATGTTAATGGACGAGAT
GATTTTATAAGAATTGAAGATTATTGGTCATCACTTCCATCTGATAAAACTTATGATTAT
ATCAAATCACTCAGTTCAGAAGATATGCAAACTCCTTTCATCCCATCGATTCTGGATTTA
AATAATTGTCGATATCTTGAAAGACTTCATTTGCCACAAAATAGAATCAAAACAATTCCT
GACTTTATTTTCTTTAATAATCCTAATCTGATTGTTCTTGATTTGCATATGAATGAAATT
GATCAATTGAACTATAATTCTTTTATTGGAATTGGTGAAAATTTAATTGGTCTTAATCTT
CGTGATAACAAAATGATTAATTTGCCTAATGGAATTTTCAATCATTTAATCAACCTCAAA
TCGCTTGATATTGGTCAAAATGAACTCAATCGACTATCAAAAAACATTTTTGGAAATTCA
TTGAGATCACTTGAAAGTTTAATTGCTGACAACAATTCAATTTCTGCAATTAATCATGAT
GTCTTTGATGCAGCTGCAAATCTTCAAACTTTATTCTTATCTGACAATTTTTGCATTAAT
GAAAATTTCTTTGAAGTTCAAAATAGTCGATTTGCTGTGAGACATAGATTGATGGATTGC
TTTAAAAATTATGATCAAGCGCCTGATGATGGAAGTTTTATAAGATGCAATTATGAAATA
CCGATAGTTCCTCGTGAAGGTCGTGCTTGTGAATTGTTGACCTTTAATCCAAATGGTAGA
GATGATTTTAATACTGTTGAAGGCGATTTTCCAATAGGAGTGACAGCAGAAAACATCACT
TTTATAGGAATGCTTCAACAACAAACTCCTATTATACCTTCTATTTTGTGCGATTTTTTC
CCAAATATTCAAGATTTCATATCAGCTATGTCAGGCCTTAATCATTTAATGTCTTCATCC
ATCAAAAACTGCAGAAATTTATTCTATTTTGCCATTCTTAATGAAGAAATTCGTGAAATC
CCAGAAGATTTCTTTGCTGTACATAATGGTCTTTTTGGAGTGACTTTTATTATGAATGAT
ATAGAAGAAATTCCAACTCGTCTTTTTGCAAATACTCCAAGATTGGAAGAAATTATATTT
TCAAACAATCGCATAAGGAATTTACATCCTGGTACTTTTGATAATCTTCCGATGCTTTAC
CTTTTGTACATAGAGAATAATTTTATTACGACTATAAACTCAAATTCTTTTGGTTCATCG
ATCAACATTGAAATCTTTTCTTTTTATAGCAATGAAATAACAGCAATAGATCCTAATTGG
TTTGATACACAACGTAAACTTAATCAGCTATTTTTAGAGGGAAATATTTGTCAAAATACA
CGCTTTATTAACATTTTAAACAACAGAGAAGCAACAAGAATTGCATTGCAACCATGTTTT
GATAATTTCAATGATGAAGGAAATCAAACAACAACTATGCTGCCAACGACAACACCAGAC
ACAACAACTACATCTTCATCTGATGGTTCTTTTATTCGATGCAATTATATCTATAGAGGA
AATAATGAATATTTTTGTCGAATGACAATCTATAATCCAAACGGACGCAATGATTTTACT
CACATTGAAGGAAATTTACCATCAAATGCAACTTATGATCAAGTTTTACATGTATCAGCA
ATAGGAGAAAACACTTTAAATGTACCTAACATCATATGCTTCCAATTTCCACAGTTGCAA
ACTATAAGAGTGCAATATTCACAATTGAATATTTTAAATTATCAATCATTTGAATATTGT
CAAAATATTGTCGAAATTAGTCTTGCAAATAATGGTTTATCAGAAATTGGCAATAATACA
TTTGGGAATCATTTACAAAAACTTGAAAGAATTGAAATTTCTATGAATCGTTTGACAAAC
ATTGGTATGAGATCATTTGGAACAGAATCTATTGCAAGATTACGAGTAGTTTGGTTTGAT
ACTAATATAATCAATGCTATTGATCCAAATTGGTTTGATTCTGCAACTAATCTTACTAAT
ATTGATATGCGTGGAAATGATTGTGCAAGACAAAATTTTAATAATGTTCATTTGAATCGA
CAACAAGTAAGAAGTGAATTGACAACTTGCTTTAATAATTATGAAGATGTTGAATTCATC
AATTGTAATTATTTGATTGATGATGAAATAAATCAATGGATGTGTGAGCTTTGTATAAGA
AATCCTCGCGGAAGAAATGATTTTACTCATATTGAAGGAACACTTCCACCTGAAACAAGT
TACAATGAAATATTACATGTCGGAATGGCATCACAATGGACTAAAAATCTTCCAACTATA
ATATGTTATCAATTTCCGCAATTACTTAATATTAATATCTTGAGCTCTAGAATAGAGATC
ATAAATCAAGAAAGTTTGAAATATTGCAACAATTTAATAAGATTTTCTCTATTTAGCAAC
AATATTGCAGAAATACCAGATGATACTTTCAGCAGCAATTTGAGAAATCTACGATCAATA
TTTTTGATCATAAATCAACTTCAATCTATAAGTTCTCGATCATTTTCTCCAGACATTTTA
GCATCTTTGAACATGGTAGTATTACATTCTAATTTCATCATAGCAATTGATCCACAATTT
TTTGATACTGCTGTAAATTTAACACTTCTTGATTTGACAAACAACATTTGTATAGACCAA
TCTTTCTGGGACGTTAATTTAAATCGACAACAAGTAAGAAATGCATTGACAAATTGCTTC
AATAATTATGACCTTATTCAAACAACAACAATATTGCCTACAACAACCACAGTTCAAATT
CCAACGACAACAACAACAGTTCAACCAATAAATTCATACATTCGATGCAGTTATCAATTT
TTGACATCTGTTGATGTTTCTTGCATTATGTCAATCTTTAATCCACAAGGAAATGATTTT
GAAATTATTGAAGGAAATTTTCCACCAATTGCAACCTTTAATCAACTTACATATATTTGG
GCTGTTGGGCAGCATACGACTAATATTCCTTCAGTCATTTGCCGCCAATTTCCACGATTG
CTTTTCCTTGATATTTCTACAAGTCGTTTGACAACAATCAATCAAAATTCATTTGCCAAT
TGCAACAATCTTCAATATATTTTACTTGCATCAAATGAAATTTCAACTATACCTGACAAT
ACTTTTGGAAGCAATTTGATAAACATTTACAGCATTGATATGAGAGCTAATCAAATACAA
AGATTGAGTTCAAGATCATTTTCAACTCAAGTTTTAAATAAAGTCAGTCAATTTCAAGCT
GACTCAAATGTCATTAACGCTATTGATGTAAATTGGTTTGATTCTGCCACAAACATCACA
CGACTTTATTTGAACAATAATTTATGTGTAAACTCAAACTTTAATGATGTTCATTTGAAT
CGACAAGTTGTTAGAAATGCTTTGAATGTTTGTTTCAATAATTATAATATAACCGCAAAT
TAA
>g17430.t1 Gene=g17430 Length=1660
MKTLLLFAVLQFLNLYGQGQEIKPHCDYSHQLFNYQCNFTINNINKRDDFEDISGIHLNF
MTDNDVTSVIAHEQYSALIPSIICDKFKNIRDLTFTASHVEILTSKAFQNCRNLRTLVIF
SNLISDLPENLFNINRNLRFLNLEKNLLTKIDSKSFSAAINSIDNFVISFNRIEAIDEKF
FDKATKLMTFWTEGNKCVSQNFFIWNSNRHQVRQQLRECFDLFERPQTPDESFIRCTYDI
WFEIECIMSIFNPNGREFDRIEGDLPDGILHQDVLVVDVWLQNTTNIPLVICETFTNLIT
LHISSSGLRTLTVEALENCRNLRSVWFSLNQISEIPDDLFRHATNLQTVILNNNHITKIK
IGMFTNSNSQLHTVWLRQNEITEIEDLAFDDLPSFTSLDVSFNKLTTVKSSFFGNSLTRL
TLFSAQNNMISSIDPEWFDGAIQLGNLNLSNNICIDNLDVWDVSHNRTGVRNELQNCFDN
FESSQTTTLIPDLEVIRCYYTFSNEIGHCIFYILNVNGRDDFIRIEDYWSSLPSDKTYDY
IKSLSSEDMQTPFIPSILDLNNCRYLERLHLPQNRIKTIPDFIFFNNPNLIVLDLHMNEI
DQLNYNSFIGIGENLIGLNLRDNKMINLPNGIFNHLINLKSLDIGQNELNRLSKNIFGNS
LRSLESLIADNNSISAINHDVFDAAANLQTLFLSDNFCINENFFEVQNSRFAVRHRLMDC
FKNYDQAPDDGSFIRCNYEIPIVPREGRACELLTFNPNGRDDFNTVEGDFPIGVTAENIT
FIGMLQQQTPIIPSILCDFFPNIQDFISAMSGLNHLMSSSIKNCRNLFYFAILNEEIREI
PEDFFAVHNGLFGVTFIMNDIEEIPTRLFANTPRLEEIIFSNNRIRNLHPGTFDNLPMLY
LLYIENNFITTINSNSFGSSINIEIFSFYSNEITAIDPNWFDTQRKLNQLFLEGNICQNT
RFINILNNREATRIALQPCFDNFNDEGNQTTTMLPTTTPDTTTTSSSDGSFIRCNYIYRG
NNEYFCRMTIYNPNGRNDFTHIEGNLPSNATYDQVLHVSAIGENTLNVPNIICFQFPQLQ
TIRVQYSQLNILNYQSFEYCQNIVEISLANNGLSEIGNNTFGNHLQKLERIEISMNRLTN
IGMRSFGTESIARLRVVWFDTNIINAIDPNWFDSATNLTNIDMRGNDCARQNFNNVHLNR
QQVRSELTTCFNNYEDVEFINCNYLIDDEINQWMCELCIRNPRGRNDFTHIEGTLPPETS
YNEILHVGMASQWTKNLPTIICYQFPQLLNINILSSRIEIINQESLKYCNNLIRFSLFSN
NIAEIPDDTFSSNLRNLRSIFLIINQLQSISSRSFSPDILASLNMVVLHSNFIIAIDPQF
FDTAVNLTLLDLTNNICIDQSFWDVNLNRQQVRNALTNCFNNYDLIQTTTILPTTTTVQI
PTTTTTVQPINSYIRCSYQFLTSVDVSCIMSIFNPQGNDFEIIEGNFPPIATFNQLTYIW
AVGQHTTNIPSVICRQFPRLLFLDISTSRLTTINQNSFANCNNLQYILLASNEISTIPDN
TFGSNLINIYSIDMRANQIQRLSSRSFSTQVLNKVSQFQADSNVINAIDVNWFDSATNIT
RLYLNNNLCVNSNFNDVHLNRQVVRNALNVCFNNYNITAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 31 | g17430.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 236 | 3.5E-16 |
| 29 | g17430.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 237 | 366 | 4.6E-15 |
| 33 | g17430.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 367 | 509 | 1.8E-16 |
| 30 | g17430.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 525 | 714 | 2.2E-24 |
| 32 | g17430.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 787 | 993 | 6.2E-23 |
| 35 | g17430.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1022 | 1236 | 1.9E-17 |
| 28 | g17430.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1238 | 1432 | 8.2E-12 |
| 34 | g17430.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1433 | 1654 | 2.7E-18 |
| 14 | g17430.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 82 | 191 | 1.4E-106 |
| 21 | g17430.t1 | PANTHER | PTHR45617 | - | 82 | 191 | 1.4E-106 |
| 11 | g17430.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 293 | 488 | 1.4E-106 |
| 18 | g17430.t1 | PANTHER | PTHR45617 | - | 293 | 488 | 1.4E-106 |
| 15 | g17430.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 560 | 700 | 1.4E-106 |
| 22 | g17430.t1 | PANTHER | PTHR45617 | - | 560 | 700 | 1.4E-106 |
| 10 | g17430.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 821 | 956 | 1.4E-106 |
| 17 | g17430.t1 | PANTHER | PTHR45617 | - | 821 | 956 | 1.4E-106 |
| 12 | g17430.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 1070 | 1237 | 1.4E-106 |
| 19 | g17430.t1 | PANTHER | PTHR45617 | - | 1070 | 1237 | 1.4E-106 |
| 13 | g17430.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 1284 | 1395 | 1.4E-106 |
| 20 | g17430.t1 | PANTHER | PTHR45617 | - | 1284 | 1395 | 1.4E-106 |
| 9 | g17430.t1 | PANTHER | PTHR45617:SF69 | SI:DKEY-1J5.4 | 1506 | 1628 | 1.4E-106 |
| 16 | g17430.t1 | PANTHER | PTHR45617 | - | 1506 | 1628 | 1.4E-106 |
| 8 | g17430.t1 | Pfam | PF13306 | BspA type Leucine rich repeat region (6 copies) | 87 | 187 | 2.1E-6 |
| 3 | g17430.t1 | Pfam | PF13855 | Leucine rich repeat | 344 | 405 | 3.9E-10 |
| 2 | g17430.t1 | Pfam | PF13855 | Leucine rich repeat | 565 | 611 | 2.1E-8 |
| 7 | g17430.t1 | Pfam | PF13306 | BspA type Leucine rich repeat region (6 copies) | 623 | 705 | 0.0014 |
| 1 | g17430.t1 | Pfam | PF13855 | Leucine rich repeat | 899 | 955 | 5.1E-8 |
| 5 | g17430.t1 | Pfam | PF13306 | BspA type Leucine rich repeat region (6 copies) | 1073 | 1185 | 4.1E-9 |
| 6 | g17430.t1 | Pfam | PF13306 | BspA type Leucine rich repeat region (6 copies) | 1287 | 1396 | 0.019 |
| 4 | g17430.t1 | Pfam | PF13855 | Leucine rich repeat | 1523 | 1579 | 2.7E-6 |
| 37 | g17430.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 38 | g17430.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 39 | g17430.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 40 | g17430.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 17 | - |
| 36 | g17430.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 1660 | - |
| 70 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 113 | 134 | 6.588 |
| 77 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 137 | 158 | 7.427 |
| 68 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 321 | 342 | 6.934 |
| 65 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 345 | 366 | 6.272 |
| 71 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 370 | 391 | 7.196 |
| 79 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 394 | 415 | 4.878 |
| 81 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 419 | 440 | 4.886 |
| 64 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 443 | 465 | 5.317 |
| 83 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 565 | 586 | 7.312 |
| 72 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 589 | 610 | 6.079 |
| 67 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 614 | 635 | 5.972 |
| 76 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 638 | 659 | 5.941 |
| 69 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 663 | 684 | 5.202 |
| 82 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 687 | 708 | 4.555 |
| 74 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 874 | 895 | 5.818 |
| 80 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 898 | 919 | 5.178 |
| 78 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1102 | 1123 | 5.486 |
| 73 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1127 | 1148 | 4.986 |
| 84 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1311 | 1332 | 6.364 |
| 85 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1336 | 1357 | 6.264 |
| 66 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1543 | 1564 | 6.788 |
| 75 | g17430.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1568 | 1589 | 4.878 |
| 62 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 111 | 134 | 68.0 |
| 44 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 136 | 158 | 38.0 |
| 63 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 295 | 318 | 89.0 |
| 43 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 319 | 342 | 6.4 |
| 47 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 344 | 366 | 22.0 |
| 53 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 369 | 391 | 140.0 |
| 56 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 392 | 415 | 7.8 |
| 59 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 417 | 440 | 13.0 |
| 46 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 566 | 586 | 120.0 |
| 57 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 588 | 610 | 210.0 |
| 50 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 613 | 635 | 120.0 |
| 58 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 636 | 659 | 0.27 |
| 61 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 661 | 684 | 4.9 |
| 55 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 872 | 895 | 5.6 |
| 42 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 896 | 919 | 15.0 |
| 49 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 1100 | 1123 | 160.0 |
| 51 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 1125 | 1148 | 190.0 |
| 52 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 1309 | 1332 | 77.0 |
| 41 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 1334 | 1357 | 3.7 |
| 48 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 1360 | 1383 | 180.0 |
| 54 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 1517 | 1540 | 110.0 |
| 60 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 1541 | 1564 | 16.0 |
| 45 | g17430.t1 | SMART | SM00369 | LRR_typ_2 | 1566 | 1589 | 96.0 |
| 25 | g17430.t1 | SUPERFAMILY | SSF52058 | L domain-like | 52 | 477 | 5.1E-37 |
| 24 | g17430.t1 | SUPERFAMILY | SSF52058 | L domain-like | 540 | 699 | 1.02E-22 |
| 26 | g17430.t1 | SUPERFAMILY | SSF52058 | L domain-like | 808 | 1188 | 2.04E-25 |
| 23 | g17430.t1 | SUPERFAMILY | SSF52058 | L domain-like | 1095 | 1628 | 8.84E-19 |
| 27 | g17430.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
