General information for g17446.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17446 is located on chr_4: 13554148..13556604 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17446 | g17446.t3 | isoform | g17446.t3 | 13552864 | 13553844 |
| chr_4 | g17446 | g17446.t3 | exon | g17446.t3.exon1 | 13552864 | 13553187 |
| chr_4 | g17446 | g17446.t3 | cds | g17446.t3.CDS1 | 13552865 | 13553187 |
| chr_4 | g17446 | g17446.t3 | exon | g17446.t3.exon2 | 13553245 | 13553844 |
| chr_4 | g17446 | g17446.t3 | cds | g17446.t3.CDS2 | 13553245 | 13553731 |
| chr_4 | g17446 | g17446.t3 | TSS | g17446.t3 | NA | NA |
| chr_4 | g17446 | g17446.t3 | TTS | g17446.t3 | NA | NA |
Sequences
>g17446.t3 Gene=g17446 Length=924
CTGCTCATTGTTTAGCTCATGATGAAAATGTTGAAAATTATTTCGTCTTACCTGGAAAAT
TTAACCTAACAAATGATGAAGAATCAAATTGGATAAATCGAACGATTTCAAAAATGATAA
TTCATGACGAATATAATCCAGATTCAGCAGCATTTCGAAGCAATTCTGACATTGCTATAT
TAGTAATGAGCTCAATGGTAATTTTTAATGATTTTATTTTCCCAATTTGTCTTCCTAATC
CTGATAATAAAGTCAATGACTTTTATGGAACTGTTGTTGGACATGGTTTTAATAATAATG
AAACTGAATATGAAAACACACCAAAATCTGCAGTTTTACACACAATTGGTTCAATGCAGT
GCATTTTTAAGCACAAAAAATATTCAATTACTGTATCAGAAAGAAGTTTTTGTGCCATCA
ATCCAATTGCAAGTCCATGTCGAGGCGATTCTGGTGGTGGATTTTTTGTAAGAAATAATG
AAACTGAACAATTTACAATTTATGGAGTTGTGTCACAGAAAAATAATTTGAAAAAATGTT
CGATTAATGATTTTACTGTTTTTGTTGATGTTACAAAATTTGCTTATTGGATTCAATCAA
AAATTTTAACGAAAACTCTTAACTTTTGTGAAATTCAGCCATCACCTTGTGGTCCAAATT
CAAAATGCATAAATTTCAATGAGAACGGCTTCTGTTCTTGTGAAGAAAATTTTCTTGGTT
TGCCACCAAATTGCAAGAAACCTGAATGTATTTCAAATTATGAATGCCCAACTGATAAAA
CTTGTGTCAAAAATGAATGCATTGATTTATGTCAATTTAGTAATTGTGGTGAAAACTCAG
AATGTATCGTTCAAAATCATAAAATGACATGTAAAAATCAAAAAGAGGATTTTGATGAAA
AATTGAGGCAATTAGAAGAAAAAT
>g17446.t3 Gene=g17446 Length=270
MIIHDEYNPDSAAFRSNSDIAILVMSSMVIFNDFIFPICLPNPDNKVNDFYGTVVGHGFN
NNETEYENTPKSAVLHTIGSMQCIFKHKKYSITVSERSFCAINPIASPCRGDSGGGFFVR
NNETEQFTIYGVVSQKNNLKKCSINDFTVFVDVTKFAYWIQSKILTKTLNFCEIQPSPCG
PNSKCINFNENGFCSCEENFLGLPPNCKKPECISNYECPTDKTCVKNECIDLCQFSNCGE
NSECIVQNHKMTCKNQKEDFDEKLRQLEEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g17446.t3 | Coils | Coil | Coil | 250 | 270 | - |
| 6 | g17446.t3 | Gene3D | G3DSA:2.40.10.10 | - | 1 | 171 | 2.4E-29 |
| 2 | g17446.t3 | PANTHER | PTHR24260 | - | 2 | 189 | 8.1E-29 |
| 3 | g17446.t3 | PANTHER | PTHR24260:SF110 | GH19262P | 2 | 189 | 8.1E-29 |
| 1 | g17446.t3 | Pfam | PF00089 | Trypsin | 2 | 160 | 5.1E-21 |
| 9 | g17446.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 19 | - |
| 10 | g17446.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 40 | - |
| 8 | g17446.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 41 | 270 | - |
| 12 | g17446.t3 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 165 | 13.874 |
| 13 | g17446.t3 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 168 | 208 | 10.298 |
| 11 | g17446.t3 | SMART | SM00020 | trypsin_2 | 1 | 160 | 0.0012 |
| 5 | g17446.t3 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 2 | 164 | 9.44E-31 |
| 4 | g17446.t3 | SUPERFAMILY | SSF90148 | DPY module | 209 | 231 | 4.71E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
