Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Huntingtin.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17448 g17448.t1 TSS g17448.t1 13557257 13557257
chr_4 g17448 g17448.t1 isoform g17448.t1 13557321 13566979
chr_4 g17448 g17448.t1 exon g17448.t1.exon1 13557321 13557376
chr_4 g17448 g17448.t1 cds g17448.t1.CDS1 13557321 13557376
chr_4 g17448 g17448.t1 exon g17448.t1.exon2 13557436 13557690
chr_4 g17448 g17448.t1 cds g17448.t1.CDS2 13557436 13557690
chr_4 g17448 g17448.t1 exon g17448.t1.exon3 13557762 13559928
chr_4 g17448 g17448.t1 cds g17448.t1.CDS3 13557762 13559928
chr_4 g17448 g17448.t1 exon g17448.t1.exon4 13560170 13565785
chr_4 g17448 g17448.t1 cds g17448.t1.CDS4 13560170 13565785
chr_4 g17448 g17448.t1 exon g17448.t1.exon5 13566134 13566547
chr_4 g17448 g17448.t1 cds g17448.t1.CDS5 13566134 13566547
chr_4 g17448 g17448.t1 exon g17448.t1.exon6 13566608 13566979
chr_4 g17448 g17448.t1 cds g17448.t1.CDS6 13566608 13566979
chr_4 g17448 g17448.t1 TTS g17448.t1 NA NA

Sequences

>g17448.t1 Gene=g17448 Length=8880
ATGGATAAATTAGCATTTCAAAAAGCAATTGATACTCTTAAGAGTACAGATTGCAACTCA
AAAGAAAAAATACAAAAATTTGATCAAATTTATTCAACTCTTTCATTGCTGACTAATCAC
AGCAATTATAAAAATTATCTTCAAAAAGCTGTGCAAATTTTGATATTATTTTGTGAAGAT
AACGACTCGAATGTTCGAATTAGTGCAGAAGAAAATTTAAATCGAATAATAAGAAATTGT
GAGCGGCAGCATCAATTGATTTTGATACAAATTGAGCTTTACCATGAAATTAAGAAAAAT
GGAAATGAAAGATCACTTCGAATTTGCCTCAATCTTTTTTCGCATTACTGTCACTTGATA
AAACATCGAAGAAAGAAAATTTATGCACAAAACCTAATTCCATGTCTTTTATCAATTGCA
AAGCGTAGAGAGCCACTTGTGATTGAAACATTTGCAGAATTTATGAAAACTTTCTCACGA
AATCTTCTGAACTGCTTAAATGACTATGAAGTAATGAAATTGATTGACCTTCTGATCGAT
AATTTATCACAAGAATGTGCAATAAAGAAAAGATGTTCAGCACAAATTATCATAACAATT
TTAGAACATTCAACAAGAAATAAATCTATAATGAGATCAATAATTGTGAGAATTCAAGAA
AATTTATCAAAAAGTCAAGAAGTGAACACAATTTTAGGAACACTTGGTCTGCTTCGATTG
ATAATTCCACATTTGATGATGTCACAAGAATTTCATCAAAAAATAATTGAAATGCTTGAA
AATTGTCTAAATTATCTTAAAAATGATTCACACAATCATACGATAATTAATGCAAATTTA
GAATTTATCAATTCATTGCTAAATGCAAGTAATGAAAACCATAAAATGTCAAAACTAATC
TGCGATAATGAAGCACATAAAGAAATACTTCTATCACGACATTCAGCATTATTGAATAAT
TCAAGAAAGTCCAGCATTGAAACAATAAAAAATCAAGATTTATTGCAAGTTCCAACATCA
AATAAATCATCAATTAGTCCTGGCAGTGGCGATTTTAGTGATGTTGAAGGTGATTCTTTC
AAATCAACAGATTTTTCATCATCATCACCTGGTGCTTTAAAAAATGTTATTGGTGCAGCT
GAAACAATGTCAATAAAATCAACAGATTCAATAAATTCGTTTTTTACATCAATTCTTGGC
AATTCGAGTACTGACAGTGTTACAAAATTCTTTAGAAAATCATCAACTGATTCGCCAGCA
CATCAATCAAAATTAAGTGAATCAGCAGATGAAAAATCAATTGATCTTTCCTTAGGTCAT
TTAAAAGATGAAAATGTTGAATATCGTGATTCACAAATGTTGCCTGAAACTGCAGAAATG
GCTTTAGATGATAATTTAGAAATGGATGAAACTCTTGAGATTGTTGAGGCATCAAATAAT
GAACAAAAAATTTATATTGGTTCAATTTATGATCAAAGTATTGTCGAATATATTGTACGA
CTTGTGTCATCAAAATTTCTACTTGATGGAAAACCAAAAATTCTCATTAATGATCAAATT
GTAAGAGTTTCAATTAAAAATTTGGCATTATTGACAATTGCAGCTTGTGTTGAGCTAAAA
AGTGAAATTTTATTGCTTAAACTTTCAAAAGATTACACGGATGAATCAATGATGGTTGAA
AGTCTTTTAAGTTATTTAGTTGATGAAGATATTCGACTTGAAGAAGAAGAAGAAAAAAAG
AAAAAAATTGATGAAATTCAATCGACATCAGATTTTATTGAAATTAAAGAAAATCATTTT
GGTGAATGCACAACAGCAACATTTTTGGATTATTTTTCACCATTAAATAAAACAATTGAT
GAGCAAGGATTAATTTCACTTAAAAATCGAATTTATGAAGAAAAAACAAAAGATCGTGAA
GAAAATGCAAAGAAAATTAATCGCGATTTATGCCAATTGCTTGCAAGATCTGACATAATT
GAATCAAAAAAATTTAATTTACCATTAATGGAAACAACTTTAAAAATGCCAGATGACAAA
GATTGTCAATTTGTTGCTGATATTCTTCTGTATGCAAGTCATGGTGATCCAGTTTTAAGA
GGAAATGTTTATTTGATCATTGGCAACTTTGTTAGGAAAGTTCTCAAAAAAAATTTTGAT
TATCAAAAATTCATTGAACGAAATGAATTTGTTAAAGATTTACTAAAATTTGATAAAATG
ATTGAACTTTTATTGACTGGAATAAAAGATGAAATTCATTCTGTAGCCAAGCAGACTTTA
ACAGTATGGGAACTAATATTTAATAATGTCATATCTGTGCTAAATACAAATGAAATTGAA
AATGTACTGAATCAAATTCTTAGAGTGATTTATAACAAATATTGGCTAGTGCAATGCAAG
TACTGTGATGTGATAAGTAAAATTGATATTGGAATGTTAAGGATGTTGATTGGTGATGGC
AAAAGTTTAGTTTACGAGAAACAAATTCGTCAACAACTTTTTACTCTAATCAAAGATAAT
GACTTCCGAGTGAGAAATCATGCAAGTGAATCACTTGCTAATTGGATTAAAAATCTATCA
CAATCAAACAATGAGATGACAAAATTGGACCAAAAAAATAATTCTTTAGTGAAATTCGTT
GAGAAAAATTTCTACAGATATGATTCATTTTCATATGGAATTAATAGAAATAAAAATTTC
AGCAACGAAATTGAGCATCATTTATCAAAAATTCTTTATGAATTGTCAAACTTTCTAATG
GAATTAAAAGATAAAAATCAACAATTTGGAGTGATTTATGCGATAAAAATTTTGATAAGA
AATTTCAATCCTTTGACATATTCAACAGTTTGGAAGGAATTTAATTTTATAAACATTTTC
AAAAGTTTCATCAATAAAAATCCAAATATTGCTTTCGATATTTCATGTCAATGTGACATG
CTAGAAGTTCTTGCTGCCTTAATTGAAGCTGATGGAATACAAAATGGAACATTTAAAGAC
AATAATGAATTTCTAACTCATTTATTGAAAATTTGCAATATTTATGCACATTTAGTCAAC
AATACAAAACTTCTTATTGTACCTAAAGGAAAAACTGATATCTTTACATCAGCCAAAGAG
CTTGCATTGATCAATAGTCTTGGATTTTTCACCAATGATCATTTTTATCTAAAATTTTAT
TTAGTCATTAAAAGTTCTTACGATTCTTATCGAATGACTATAAATTTCGATGCTGAATTT
AAACTCAAGCAATTGTTGCATCTTGCATTGAAAAATATTCAAATTTTGCTTGAATTTCAA
ACAATGACAGATGATGGAAAGTTAATTGAAGAAATTGTCAGTTATTTGAACCAACTTGTG
CTTTTCCAACCCGATGACTGCATTTTAACTACAAAAATTCTATTAAAATTTCTTTTCCAA
AAAAACTTTTGCAATCGAAAAATTGAACTTGATGGAATTTTAAATGCAGCACAAAATAAT
GATAGCAAATTTATTTTTGAGAAATATGAAACTTTTTTCTCATTTGATACAACGACAATT
GCACAAAATTCAGAAAAATTGATAAAACTTTTTGATACTTTGGTCATTCAAGGTTTGAGA
TTATTTTCAAAATCATCGACTGGACTGCAAGCAAAAGTTCTTGATTTACTTTGTCAATTG
TTGGAATTTAATATAAATTACATGCAACTTGATGCAAAGAAAGTTTTTGTTGATTTTGTG
CTAAAACAACTTGAATATATTGAAAATGGTTTAGTCATTGATGGTGAGATTTTGGCAAGA
AAAATTATTGAATTTTTGATTTATTTGACAAAGTTAAAAGACAAAAAAATTCTGACAATG
CCAAAAATCATCAATATTATCGATAATTTATTAGCATCAACAAATCAATCAGCAAAAAGT
TGTGGAATTCAAGCACTTTTAGTTATGACAAATGAATTATTCTTTAAAAATATCAAAATA
TTGTCAACCAATGAACCAGAAGTCATTGAAGCTCATCTAAAAGATTTAAATGCACAACGT
GAAGTTGCTCTAAGTATGATGATAAAATTTGTCCATCATAAAGACATTCAAGAATATTTT
GAATGGATTTTCATGAAATCAAAAATTGAAAATAATTTTGGAATTGAAATTGATGAAAAT
GAAATTTATCAACATTTACTACAAAGTTCATCAAGTGAATTTAAACTTGCATTGAGTATC
AGTAAAAATATTCTATTGGAAAGTAAAAATTTTAAGTCGGTTATTGTAATTTATTGGAAG
TTGTTGAGCTCAACAGATGATGCAGCTTCTTTGAAGTCAAATACTTCATCAGAAAGACTG
TTGTTAAGTACAGCAACAAATGCTTTTAGTCTGGCAGCTTCAAATGTTTTAGGAGAACAA
AATTTAAATTTACCACAAGCATCAGATCAGTCATCACCAAATTTAACAGAACAACAAGCA
GCAAGTTCACCTAAAAGTTCGTCAGAAAGGCAAAATTTGAATCCATTAGAACAGCAATCG
AGTTCATCAAACAGACAACAATTGAGCTCAAGAAATTCACTAGAACTTCTTGTATTTCTT
CAAGAAAACATTTTATTAATCGCAGAAGAAATTTATTTGGTAAATCACATCAAATTGTAT
CATCAAAAACAAAATATCCAAGGTGATGCTGTCAAGATTTTTCTTAACTTACATTTGAAA
TTTTTGAAAAGAGAATTAAGTTCAACAAGTGAGAATTTTATTTTTATGGAAGACAATTTC
AATTTTTCAATCGGAAGTCAAAATTTTACATCTGGAAATTCAATTGTTTTCTCTGGAAAT
TTAAATTCTTCATCTACAATTGCAAATTTTTTAACTAGCAATTCAAATAAATCTTCATTG
ACAGAAAATTCAATAAATTCATCAACTGACAATTCTAACACTTTTAATATAGAAAAATTC
ACAAATTTCCTTCAGTTTCAAAAGTTTCCAACTTTATTCCTCGATCTCAAAGAAATTTTA
GATCCAAAAGACCTCATCGAATCAACTTGTGAATCAAAAATTGACATTTGCATGAATTTT
CTAATTTCCCTTAACTACAAAGTCATAGAAATTGAAAATTTTATAAATTTAACAGAATCA
ACAATAAATCGAGGAAAATTGAAGAAATCTTTGTACCAAAACATTTTTAATAAGAGAAAA
AATGTCACCGATTGGGATGGAAGTGAAATTATGAATTTCTTCAAAGATTCTGAAAAAATG
GAAATTTTATTGAATTTTTCACATGATTCACTGCTGTCAAAATTACTTGAAGATGAAAAA
ATTTCAAAAACAATCATTAAAAAATTGTCGATTGTGAAAATTTCAACTAAGAAAGTTAAA
TTGATTTTGGAAAAAGTTCACAAATCATGTCTAAAAGATGCTTGCATTTTTTTGATTTCT
CAAGTTGATCACAAAGATTTCAACATTTTTCAATTCGTGATTGTCAAAAGATTCAAAAAT
CAAAGAGAAAATTTTGACTTTGAAGAAATAAAATTGAAAATTTTAGAATTTAAATTGGAA
AACAAATTCAAAATGTTGCTGCAAGTTATGCAAACTTCAAATCATAAAGAATTACCAAAT
ATTGATTATTCAAAAATGAAAAAGACAATCGATGAACAATGGCTGTTTGATCAAGCTCAA
AATGTCATTAATAAACAACAAAATCCATTACGAATTGCTGAAATGCTTTATGAAATTAAA
TCAGAATCAAAATTAACAACATTGTTGAATGATGAAAATTTTAACATTGAACTTTTGATT
CCGATCATTAATGTTTCATTTGAAAATATGTTGAGAAATTTCCGAATTGACTGCATTCAA
AAAAATCCACATTTGACTTATATGAAAATTTCACCATTGTTGAAGGTTGCTATTGTGTTG
TTGACGAGTTTACTGGAGAAAAATTATAAAAGGGATGGTAATTTTGGTAGTTCTGATGAA
TATTGTGAAAGTAGTGAGAAGAATAAAGGAATCAGTGACAAAAGTGATGGAAATATGGAT
GGAAATAACGCAAAGAATGAAAAAAGATATGATAGTAAAAATAAAATTGATGACGAAAAC
AACCAAAGAGATGACAAAGCAGGCAAAAATGATGAAAAAAGTAGTCACGAAAAACATGAC
AAATCTGACAAAAATAACAAAACAGAAACACAAAAATTCCATCAAAAATCTGATCAAAAC
GATGAAGAAATTTTGAAATTAGCTAAAGTCGTAAAAGTTTACATGCAAAATATTCATGAA
ACGACACAAATTGCTTTAATTTATGTTGAAGTCAAGTTCATTGAGAAATATTTGCTCGAC
AATCTGTTAAAAGAATATTTCAAGGAACTTTTGATGAATTTTGTTAATTTATTAATTGAA
AGGCTTGATGAAATCGAACTTATAAATGCATGCAAAGATTATAGCTCAAAATATGATCGA
GTCGAAGCTTCATCTTCTGATAAAATTCAATCTTTAGAAACTGACAGCAACAAATTCAAA
GCTTTAAAATCAGTCCAAACAAATTACAAACTTAATTCAATAGATTTCCAAAATATTGAA
CATACAGAAATAATCTTAACAACAATAAAATCAATAATATCAAACGATCAAATCAACATT
GACACAATAAATGATCAAATAATTTCATTCATCTTCCAACAACTTCATGAAGCATTTAAG
AATTCAGATTTTGTCACAAAATATCAACATCCACAATTATTTGATGAACTTGACAATGAA
ATAATGAAACAAATAATTTTCATTGCAAAAATTCAAGAAATTTATGAAGATGGTGAATTT
GAATTGATTTTACCAAAACTAACAGAAGCAAAGAGAAATTTGATAGAAATTTCATTTGAA
ATGACAAAATTTATTTTTAAAATTAATAAATTTTATCAATTTACAATAACACCATATGAA
GTAATTTTAAATTATCGTTCTGGTGATGATTTGCTTGATAAGATTGGTTTAAAATTGAAA
CAAATTCCAATTGAATATTTAAATGACAGTGATTTATTAGAGCGATATGTAAGAAGAATA
AATCGTTATGGATTCACACAAAGACAAGAATTTGAAGAAATTTTCATGACACTTTTGGTT
CTGCTTAATCAATGGAATGAAATACAAGAAGCTGAAGAACAATTTTGTATTAAACAACTT
TGCCTACAAGTTAATATTGACCTTATTTTATCATGCTTCAGTCAAAATAAAAATTTTGCA
CATCTTCCAAGATTAGAAAAATTCACAAAAATTGATAAAATTGGAATTAAAAAATTGCAT
CATATTCAGGATCTTTTGAGTTCAAAATTGAACATTTTTTATCAACCAAATTTAGAAAGA
GTCAGCATAAATGATGAAAATTGTTTAACAATAACAAAGTCATTTGGAATGAATCAATTT
TCACTTGATTATACTTGGAATATGACAAACAATGAATATAATAAGAAAAACATGACTTAC
ATTTATGCTGAAAAACTTGGAATTGATTATAAAAGTTCAATTCAATTAATTTATGACCTG
ATGACACAAATGATTGATGAAAATCCTGTAATTGTTTTACCAAATTTATCAAAACTTGTC
GATTTACTTGATAATAATGAACAATTCAAATGGATAAATAAGAAAATGTTAGCACTTTAT
GAAACTGTCTGTAGTGAGGACACAATTTCACATCAATACATAATTTATTTATTATGCCGA
TCTTCAGCTGTTCTTGTTCCATCATTGAGTGAAATTCAACAATTAATTCCAATTATTAAT
AAATATCTTGGCTGTAATCATATGTTTGTTAGAAATGCAACACTTCATGGACTTTTATGT
CTTTTTGAATCACTGATTAAGACAAATACAACAATTGGTGGAATAAGTGATGAAATAAAA
TTGCTAAGAACAACAATTGTTAATTATACAAATAAAAATGGGATTGTTTATGAATGTGCA
TCAACATCGACTTCACCTGAACACGACAAACTTGTTTGGAGCTTGAACTTTTATGTCATT
GAAAACACTTTGAAATTTGGTGATTGCAATGAACTTTTGATTGATACAATTATATCAGCC
AATAACATTTTGAAACGATCAAATGATATTGATTTGTATTTTCTTATCATTAATGGACTT
GAACGATTAATAATTGTAAACGAAGAAAATAAGCTTTACCGTGAAAAAGTCGAAAAACTT
GCACTTGATCTTCTGAAAAATGAGAATAAAAATTTTTCAATTGGAGGTCTAAAACTTCTT
GTAACTTGCATGTATGTCGGATCATTGCAGCAACTTGAAAATACAGAAAAATCAAATGGA
ATTGTTCAAGATGAGCCAGAAATTGTGATGCAATCAACAGAGAAAATTGAAATTTTATTC
AATCGAATTCGAAACACAACAGCTGATGAAGCAGAAGTTTATGGAAGAGTTCTTGGAAGA
ATTTTGAAAGATTTATTACCGCCAAATGAAATTTTGACTAAAATTATCAAAGAACTATTG
ATTTTGAATCAATCAAATACGACAATTATTTCGAAAATTATTCATCAAGTTTTTCGAACA
GCAATTGATTCATCATTTTTAGTTCTTCTACAAGAATGGCTAATTTGTTCTTTGCCAAAT
TTTCTCAACTATCCAAATAGAAAAAAATCAATTTTATTCCTCAATTTAATTTTCATGTCA
TCAACATTGAATCAAAATTTATTAAAACTTTTTCCACTTTCACTTGATGAAGAAATTCCA
GAATCAGATTTATATCAAATATTTATTATCAGTGCTAAAGATTTTTATGATCGTCTATCA
GATAAACAAAAATCAGCTTTTCGTGATGCTTTTAGTAATCGACTTATGACATCATCAACA
TCACCAACGAGGAATTTAAATGAAAATTTTTTTCAATGTTTAATTAAAAATTTACAGTAA

>g17448.t1 Gene=g17448 Length=2959
MDKLAFQKAIDTLKSTDCNSKEKIQKFDQIYSTLSLLTNHSNYKNYLQKAVQILILFCED
NDSNVRISAEENLNRIIRNCERQHQLILIQIELYHEIKKNGNERSLRICLNLFSHYCHLI
KHRRKKIYAQNLIPCLLSIAKRREPLVIETFAEFMKTFSRNLLNCLNDYEVMKLIDLLID
NLSQECAIKKRCSAQIIITILEHSTRNKSIMRSIIVRIQENLSKSQEVNTILGTLGLLRL
IIPHLMMSQEFHQKIIEMLENCLNYLKNDSHNHTIINANLEFINSLLNASNENHKMSKLI
CDNEAHKEILLSRHSALLNNSRKSSIETIKNQDLLQVPTSNKSSISPGSGDFSDVEGDSF
KSTDFSSSSPGALKNVIGAAETMSIKSTDSINSFFTSILGNSSTDSVTKFFRKSSTDSPA
HQSKLSESADEKSIDLSLGHLKDENVEYRDSQMLPETAEMALDDNLEMDETLEIVEASNN
EQKIYIGSIYDQSIVEYIVRLVSSKFLLDGKPKILINDQIVRVSIKNLALLTIAACVELK
SEILLLKLSKDYTDESMMVESLLSYLVDEDIRLEEEEEKKKKIDEIQSTSDFIEIKENHF
GECTTATFLDYFSPLNKTIDEQGLISLKNRIYEEKTKDREENAKKINRDLCQLLARSDII
ESKKFNLPLMETTLKMPDDKDCQFVADILLYASHGDPVLRGNVYLIIGNFVRKVLKKNFD
YQKFIERNEFVKDLLKFDKMIELLLTGIKDEIHSVAKQTLTVWELIFNNVISVLNTNEIE
NVLNQILRVIYNKYWLVQCKYCDVISKIDIGMLRMLIGDGKSLVYEKQIRQQLFTLIKDN
DFRVRNHASESLANWIKNLSQSNNEMTKLDQKNNSLVKFVEKNFYRYDSFSYGINRNKNF
SNEIEHHLSKILYELSNFLMELKDKNQQFGVIYAIKILIRNFNPLTYSTVWKEFNFINIF
KSFINKNPNIAFDISCQCDMLEVLAALIEADGIQNGTFKDNNEFLTHLLKICNIYAHLVN
NTKLLIVPKGKTDIFTSAKELALINSLGFFTNDHFYLKFYLVIKSSYDSYRMTINFDAEF
KLKQLLHLALKNIQILLEFQTMTDDGKLIEEIVSYLNQLVLFQPDDCILTTKILLKFLFQ
KNFCNRKIELDGILNAAQNNDSKFIFEKYETFFSFDTTTIAQNSEKLIKLFDTLVIQGLR
LFSKSSTGLQAKVLDLLCQLLEFNINYMQLDAKKVFVDFVLKQLEYIENGLVIDGEILAR
KIIEFLIYLTKLKDKKILTMPKIINIIDNLLASTNQSAKSCGIQALLVMTNELFFKNIKI
LSTNEPEVIEAHLKDLNAQREVALSMMIKFVHHKDIQEYFEWIFMKSKIENNFGIEIDEN
EIYQHLLQSSSSEFKLALSISKNILLESKNFKSVIVIYWKLLSSTDDAASLKSNTSSERL
LLSTATNAFSLAASNVLGEQNLNLPQASDQSSPNLTEQQAASSPKSSSERQNLNPLEQQS
SSSNRQQLSSRNSLELLVFLQENILLIAEEIYLVNHIKLYHQKQNIQGDAVKIFLNLHLK
FLKRELSSTSENFIFMEDNFNFSIGSQNFTSGNSIVFSGNLNSSSTIANFLTSNSNKSSL
TENSINSSTDNSNTFNIEKFTNFLQFQKFPTLFLDLKEILDPKDLIESTCESKIDICMNF
LISLNYKVIEIENFINLTESTINRGKLKKSLYQNIFNKRKNVTDWDGSEIMNFFKDSEKM
EILLNFSHDSLLSKLLEDEKISKTIIKKLSIVKISTKKVKLILEKVHKSCLKDACIFLIS
QVDHKDFNIFQFVIVKRFKNQRENFDFEEIKLKILEFKLENKFKMLLQVMQTSNHKELPN
IDYSKMKKTIDEQWLFDQAQNVINKQQNPLRIAEMLYEIKSESKLTTLLNDENFNIELLI
PIINVSFENMLRNFRIDCIQKNPHLTYMKISPLLKVAIVLLTSLLEKNYKRDGNFGSSDE
YCESSEKNKGISDKSDGNMDGNNAKNEKRYDSKNKIDDENNQRDDKAGKNDEKSSHEKHD
KSDKNNKTETQKFHQKSDQNDEEILKLAKVVKVYMQNIHETTQIALIYVEVKFIEKYLLD
NLLKEYFKELLMNFVNLLIERLDEIELINACKDYSSKYDRVEASSSDKIQSLETDSNKFK
ALKSVQTNYKLNSIDFQNIEHTEIILTTIKSIISNDQINIDTINDQIISFIFQQLHEAFK
NSDFVTKYQHPQLFDELDNEIMKQIIFIAKIQEIYEDGEFELILPKLTEAKRNLIEISFE
MTKFIFKINKFYQFTITPYEVILNYRSGDDLLDKIGLKLKQIPIEYLNDSDLLERYVRRI
NRYGFTQRQEFEEIFMTLLVLLNQWNEIQEAEEQFCIKQLCLQVNIDLILSCFSQNKNFA
HLPRLEKFTKIDKIGIKKLHHIQDLLSSKLNIFYQPNLERVSINDENCLTITKSFGMNQF
SLDYTWNMTNNEYNKKNMTYIYAEKLGIDYKSSIQLIYDLMTQMIDENPVIVLPNLSKLV
DLLDNNEQFKWINKKMLALYETVCSEDTISHQYIIYLLCRSSAVLVPSLSEIQQLIPIIN
KYLGCNHMFVRNATLHGLLCLFESLIKTNTTIGGISDEIKLLRTTIVNYTNKNGIVYECA
STSTSPEHDKLVWSLNFYVIENTLKFGDCNELLIDTIISANNILKRSNDIDLYFLIINGL
ERLIIVNEENKLYREKVEKLALDLLKNENKNFSIGGLKLLVTCMYVGSLQQLENTEKSNG
IVQDEPEIVMQSTEKIEILFNRIRNTTADEAEVYGRVLGRILKDLLPPNEILTKIIKELL
ILNQSNTTIISKIIHQVFRTAIDSSFLVLLQEWLICSLPNFLNYPNRKKSILFLNLIFMS
STLNQNLLKLFPLSLDEEIPESDLYQIFIISAKDFYDRLSDKQKSAFRDAFSNRLMTSST
SPTRNLNENFFQCLIKNLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g17448.t1 Coils Coil Coil 852 872 -
6 g17448.t1 Gene3D G3DSA:1.25.10.10 - 25 300 1.6E-5
5 g17448.t1 MobiDBLite mobidb-lite consensus disorder prediction 1466 1507 -
4 g17448.t1 MobiDBLite mobidb-lite consensus disorder prediction 1979 2058 -
1 g17448.t1 PANTHER PTHR10170 HUNTINGTON DISEASE PROTEIN 3 2932 0.0
2 g17448.t1 SUPERFAMILY SSF48371 ARM repeat 33 293 2.54E-15
3 g17448.t1 SUPERFAMILY SSF48371 ARM repeat 33 1069 9.42E-11

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values