General information for g17458.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glycerol-3-phosphate phosphatase.
Parent gene
- The parent gene g17458 is located on chr_4: 13587661..13590155 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17458 | g17458.t10 | TSS | g17458.t10 | 13586560 | 13586560 |
| chr_4 | g17458 | g17458.t10 | isoform | g17458.t10 | 13586644 | 13589036 |
| chr_4 | g17458 | g17458.t10 | exon | g17458.t10.exon1 | 13586644 | 13586740 |
| chr_4 | g17458 | g17458.t10 | exon | g17458.t10.exon2 | 13586830 | 13587501 |
| chr_4 | g17458 | g17458.t10 | cds | g17458.t10.CDS1 | 13587072 | 13587501 |
| chr_4 | g17458 | g17458.t10 | exon | g17458.t10.exon3 | 13587593 | 13588135 |
| chr_4 | g17458 | g17458.t10 | cds | g17458.t10.CDS2 | 13587593 | 13587891 |
| chr_4 | g17458 | g17458.t10 | exon | g17458.t10.exon4 | 13588688 | 13589036 |
| chr_4 | g17458 | g17458.t10 | TTS | g17458.t10 | 13589073 | 13589073 |
Sequences
>g17458.t10 Gene=g17458 Length=1661
ATGAATTATAAAATTCCTGTGAACTTATCAAATTACCCAAAAGAAAGTCTACAAAAGTTT
TTTGATGATTTTGATGTAATTTTTACTGATTGTGACGGGATTTTAAAGGGAGTTTTTCGA
AAATTTTTGGTAGACTGACTATGAATCTTCTGCTGACAACATTTTAAATTCCTAATTAAG
CCTTACATGAGACTCAAACAAATATTTTTTCATCAAACAACAACTAATCAAAAAATTGTA
AATAATTAAATTTTAGGTGTTTTAATAAAAGAAAATTCAGTCATTGATTCATCAAATCTT
CTCATCAATAAATTTCTCGAAAATGGAAAGAAAGTTTTTATGGTTTCCAACAATAATCAA
ACCACTCGTGATGATTTATTAAAAAAATGTCAGAATCTAAATTTCAATTTCACAATCGAT
AATATTTTTACATCATCTTCCATCACTGGAATGTATTTGAAATCTTTGAATTTTAATAAA
AAAGCTTATGTGATTGGTTCAGAAGAATTAGGAGAAGAATTGACAAAATTTGGTATTGAA
CATATTGGAATTGGAAGAGATGACATGAGTGACACTTATGGTGAATATATGATGAACAAT
TACAAACTTTATGAAGATGTTGGTGCTGTCATTGTGGGACTTGATAAATTTTTCAACATT
CCTAAAATGCTCAAAGCAATGAATTATTTAAAAAATCCTGAAATTTTATTTTTAGCAACA
AATGTTGATGTGAGATCAGAATTTCCGAATTTGATTTTTCCTGATGCAGGTCCAATAGTA
GCTTCAATAGAAAAAGCTTCATATAGAAAAGCAACAGTAATTGGAAAACCTTCATCAATT
CTATTTGATTTATTAAAGCTCAAAAGTGATAAAGAAAGAATTTTAATGATTGGTGACAGA
TTGAGTGTTGATATTGCTTTTGGAAAAAATTCCGGAATTAAAACAATGCTTGTTGAAACT
GGTGATGATAAAATGGAAAATGTTGGAGAAATTTTGAGAAAGATTGAGGAAAATGAAGAA
AATCTAATACCTGATTATGTTGTAAAAAGTTTAGGATTATTTTTGTAAAACAAACAACAA
CAGAATTACAAACTACTACAGAAAATTTATTTTGTTGGGATGAAACCATTGAAGACTTAG
TTTATTTCTTAAAAGGATTAAATCTACCTTTAGAATTAAATTTATTGCAGACACAAAATC
AACTAAACATTTTACAAAAGAAATTGACAGATTCAAAAATTTTAATAAATATTCTTCAAC
AAGAAATGATTAAAAAAATGGAAGCTTTTGATAAATTTCAAAATGATTTAGAATGAAGTC
GAAGTTTGTCTTTTCGTCGTGGTGATGTTAGAAGAGTTTGAAAATGTTTCCATTGGGCAT
ACTGTGAAAATAAAAGTTTATAAAATAGATTAAGATTTTAAAATTCAAAAAAAATTTTCA
ACAAAACGAATTTTAAAAACTCACATGGAAATTCATGATACAAACCGATCAAAACAATTA
AAATGTAATAAATGTGATTATTCAACTTTTAAGAAAGGCGTATTAAAAACACATCAAAAA
GCTCATGACTCTGCTCGTTGTAAAATTTCAAATGTCACAACTGCAACTTTTCGACTAATA
AAAAGGAATTTTAAAAAACCATCATTTAATTCATAATAAAA
>g17458.t10 Gene=g17458 Length=242
MVSNNNQTTRDDLLKKCQNLNFNFTIDNIFTSSSITGMYLKSLNFNKKAYVIGSEELGEE
LTKFGIEHIGIGRDDMSDTYGEYMMNNYKLYEDVGAVIVGLDKFFNIPKMLKAMNYLKNP
EILFLATNVDVRSEFPNLIFPDAGPIVASIEKASYRKATVIGKPSSILFDLLKLKSDKER
ILMIGDRLSVDIAFGKNSGIKTMLVETGDDKMENVGEILRKIEENEENLIPDYVVKSLGL
FL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g17458.t10 | Gene3D | G3DSA:3.40.50.1000 | - | 2 | 239 | 0 |
| 7 | g17458.t10 | Gene3D | G3DSA:3.40.50.1000 | - | 32 | 162 | 0 |
| 3 | g17458.t10 | PANTHER | PTHR19288 | 4-NITROPHENYLPHOSPHATASE-RELATED | 1 | 239 | 0 |
| 4 | g17458.t10 | PANTHER | PTHR19288:SF75 | FI11325P-RELATED | 1 | 239 | 0 |
| 1 | g17458.t10 | Pfam | PF13344 | Haloacid dehalogenase-like hydrolase | 2 | 67 | 0 |
| 2 | g17458.t10 | Pfam | PF13242 | HAD-hyrolase-like | 160 | 238 | 0 |
| 5 | g17458.t10 | SUPERFAMILY | SSF56784 | HAD-like | 2 | 238 | 0 |
| 8 | g17458.t10 | TIGRFAM | TIGR01460 | HAD-SF-IIA: HAD hydrolase, family IIA | 1 | 208 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
