General information for g17458.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17458 is located on chr_4: 13587661..13590155 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17458 | g17458.t13 | TSS | g17458.t13 | 13586560 | 13586560 |
| chr_4 | g17458 | g17458.t13 | isoform | g17458.t13 | 13587164 | 13589036 |
| chr_4 | g17458 | g17458.t13 | exon | g17458.t13.exon1 | 13587164 | 13587312 |
| chr_4 | g17458 | g17458.t13 | cds | g17458.t13.CDS1 | 13587183 | 13587312 |
| chr_4 | g17458 | g17458.t13 | exon | g17458.t13.exon2 | 13587448 | 13587501 |
| chr_4 | g17458 | g17458.t13 | cds | g17458.t13.CDS2 | 13587448 | 13587501 |
| chr_4 | g17458 | g17458.t13 | exon | g17458.t13.exon3 | 13587593 | 13588135 |
| chr_4 | g17458 | g17458.t13 | cds | g17458.t13.CDS3 | 13587593 | 13587891 |
| chr_4 | g17458 | g17458.t13 | exon | g17458.t13.exon4 | 13588688 | 13589036 |
| chr_4 | g17458 | g17458.t13 | TTS | g17458.t13 | 13589073 | 13589073 |
Sequences
>g17458.t13 Gene=g17458 Length=1095
ATCATCTTCCATCACTGGAATGTATTTGAAATCTTTGAATTTTAATAAAAAAGCTTATGT
GATTGGTTCAGAAGAATTAGGAGAAGAATTGACAAAATTTGGTATTGAACATATTGGAAT
TGGAAGAGATGACATGAGTGACACTTATGCAACAAATGTTGATGTGAGATCAGAATTTCC
GAATTTGATTTTTCCTGATGCAGGTCCAATAGTAGCTTCAATAGAAAAAGCTTCATATAG
AAAAGCAACAGTAATTGGAAAACCTTCATCAATTCTATTTGATTTATTAAAGCTCAAAAG
TGATAAAGAAAGAATTTTAATGATTGGTGACAGATTGAGTGTTGATATTGCTTTTGGAAA
AAATTCCGGAATTAAAACAATGCTTGTTGAAACTGGTGATGATAAAATGGAAAATGTTGG
AGAAATTTTGAGAAAGATTGAGGAAAATGAAGAAAATCTAATACCTGATTATGTTGTAAA
AAGTTTAGGATTATTTTTGTAAAACAAACAACAACAGAATTACAAACTACTACAGAAAAT
TTATTTTGTTGGGATGAAACCATTGAAGACTTAGTTTATTTCTTAAAAGGATTAAATCTA
CCTTTAGAATTAAATTTATTGCAGACACAAAATCAACTAAACATTTTACAAAAGAAATTG
ACAGATTCAAAAATTTTAATAAATATTCTTCAACAAGAAATGATTAAAAAAATGGAAGCT
TTTGATAAATTTCAAAATGATTTAGAATGAAGTCGAAGTTTGTCTTTTCGTCGTGGTGAT
GTTAGAAGAGTTTGAAAATGTTTCCATTGGGCATACTGTGAAAATAAAAGTTTATAAAAT
AGATTAAGATTTTAAAATTCAAAAAAAATTTTCAACAAAACGAATTTTAAAAACTCACAT
GGAAATTCATGATACAAACCGATCAAAACAATTAAAATGTAATAAATGTGATTATTCAAC
TTTTAAGAAAGGCGTATTAAAAACACATCAAAAAGCTCATGACTCTGCTCGTTGTAAAAT
TTCAAATGTCACAACTGCAACTTTTCGACTAATAAAAAGGAATTTTAAAAAACCATCATT
TAATTCATAATAAAA
>g17458.t13 Gene=g17458 Length=160
MYLKSLNFNKKAYVIGSEELGEELTKFGIEHIGIGRDDMSDTYATNVDVRSEFPNLIFPD
AGPIVASIEKASYRKATVIGKPSSILFDLLKLKSDKERILMIGDRLSVDIAFGKNSGIKT
MLVETGDDKMENVGEILRKIEENEENLIPDYVVKSLGLFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g17458.t13 | Gene3D | G3DSA:3.40.50.1000 | - | 1 | 39 | 1.0e-06 |
| 7 | g17458.t13 | Gene3D | G3DSA:3.40.50.1000 | - | 40 | 76 | 5.1e-05 |
| 6 | g17458.t13 | Gene3D | G3DSA:3.40.50.1000 | - | 77 | 160 | 0.0e+00 |
| 2 | g17458.t13 | PANTHER | PTHR19288 | 4-NITROPHENYLPHOSPHATASE-RELATED | 43 | 157 | 0.0e+00 |
| 3 | g17458.t13 | PANTHER | PTHR19288:SF75 | FI11325P-RELATED | 43 | 157 | 0.0e+00 |
| 1 | g17458.t13 | Pfam | PF13242 | HAD-hyrolase-like | 78 | 156 | 0.0e+00 |
| 4 | g17458.t13 | SUPERFAMILY | SSF56784 | HAD-like | 2 | 156 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
