General information for g17458.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17458 is located on chr_4: 13587661..13590155 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17458 | g17458.t15 | TSS | g17458.t15 | 13586560 | 13586560 |
| chr_4 | g17458 | g17458.t15 | isoform | g17458.t15 | 13587448 | 13589367 |
| chr_4 | g17458 | g17458.t15 | exon | g17458.t15.exon1 | 13587448 | 13587501 |
| chr_4 | g17458 | g17458.t15 | exon | g17458.t15.exon2 | 13587602 | 13588135 |
| chr_4 | g17458 | g17458.t15 | cds | g17458.t15.CDS1 | 13587709 | 13587891 |
| chr_4 | g17458 | g17458.t15 | exon | g17458.t15.exon3 | 13588688 | 13589367 |
| chr_4 | g17458 | g17458.t15 | TTS | g17458.t15 | NA | NA |
Sequences
>g17458.t15 Gene=g17458 Length=1268
CAACAAATGTTGATGTGAGATCAGAATTTCCGAATTTGATTTTTCCTGATGCAGTAGCTT
CAATAGAAAAAGCTTCATATAGAAAAGCAACAGTAATTGGAAAACCTTCATCAATTCTAT
TTGATTTATTAAAGCTCAAAAGTGATAAAGAAAGAATTTTAATGATTGGTGACAGATTGA
GTGTTGATATTGCTTTTGGAAAAAATTCCGGAATTAAAACAATGCTTGTTGAAACTGGTG
ATGATAAAATGGAAAATGTTGGAGAAATTTTGAGAAAGATTGAGGAAAATGAAGAAAATC
TAATACCTGATTATGTTGTAAAAAGTTTAGGATTATTTTTGTAAAACAAACAACAACAGA
ATTACAAACTACTACAGAAAATTTATTTTGTTGGGATGAAACCATTGAAGACTTAGTTTA
TTTCTTAAAAGGATTAAATCTACCTTTAGAATTAAATTTATTGCAGACACAAAATCAACT
AAACATTTTACAAAAGAAATTGACAGATTCAAAAATTTTAATAAATATTCTTCAACAAGA
AATGATTAAAAAAATGGAAGCTTTTGATAAATTTCAAAATGATTTAGAATGAAGTCGAAG
TTTGTCTTTTCGTCGTGGTGATGTTAGAAGAGTTTGAAAATGTTTCCATTGGGCATACTG
TGAAAATAAAAGTTTATAAAATAGATTAAGATTTTAAAATTCAAAAAAAATTTTCAACAA
AACGAATTTTAAAAACTCACATGGAAATTCATGATACAAACCGATCAAAACAATTAAAAT
GTAATAAATGTGATTATTCAACTTTTAAGAAAGGCGTATTAAAAACACATCAAAAAGCTC
ATGACTCTGCTCGTTGTAAAATTTCAAATGTCACAACTGCAACTTTTCGACTAATAAAAA
GGAATTTTAAAAAACCATCATTTAATTCATAATAAAAATAAAAATTTACATTGTACAAAA
TGTGATTTCAAAACAATTCAAAAGGGATGTTTGTAAAACATTTAAAAAATCATCATTAAA
AATTTAATTCTTTTTAATTTTTAAACTAATCCTATTAATCCATAAAATTCTGGAAAATGA
AATTTAAAAATTTGCTGTTTGATATTTTAAAAAATTTTAATTTTATATTATAATTTTCAT
GTCATTTATTTACCTAAAATTATCACAAAATTCATAAAAATAAAATATTTCAACCTCGAC
ATCTTGGATGGGCCATCGTGAGCCTAATAGCGTATTTTTTTGCAAAAAACCGCTAAAAAT
GGCTTTCT
>g17458.t15 Gene=g17458 Length=60
MIGDRLSVDIAFGKNSGIKTMLVETGDDKMENVGEILRKIEENEENLIPDYVVKSLGLFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g17458.t15 | Gene3D | G3DSA:3.40.50.1000 | - | 1 | 57 | 0 |
| 1 | g17458.t15 | Pfam | PF13242 | HAD-hyrolase-like | 1 | 56 | 0 |
| 2 | g17458.t15 | SUPERFAMILY | SSF56784 | HAD-like | 1 | 57 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
