General information for g17458.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glycerol-3-phosphate phosphatase.
Parent gene
- The parent gene g17458 is located on chr_4: 13587661..13590155 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17458 | g17458.t6 | TSS | g17458.t6 | 13586560 | 13586560 |
| chr_4 | g17458 | g17458.t6 | isoform | g17458.t6 | 13586644 | 13588231 |
| chr_4 | g17458 | g17458.t6 | exon | g17458.t6.exon1 | 13586644 | 13587501 |
| chr_4 | g17458 | g17458.t6 | cds | g17458.t6.CDS1 | 13587072 | 13587501 |
| chr_4 | g17458 | g17458.t6 | exon | g17458.t6.exon2 | 13587593 | 13588231 |
| chr_4 | g17458 | g17458.t6 | cds | g17458.t6.CDS2 | 13587593 | 13587891 |
| chr_4 | g17458 | g17458.t6 | TTS | g17458.t6 | 13589073 | 13589073 |
Sequences
>g17458.t6 Gene=g17458 Length=1497
ATGAATTATAAAATTCCTGTGAACTTATCAAATTACCCAAAAGAAAGTCTACAAAAGTTT
TTTGATGATTTTGATGTAATTTTTACTGATTGTGACGGTAAGATAAAATTTTTAAATTGA
CAAAACCTCAAAGAGTGATACTGAAATTCATAGTCAAATATCCGATAATTTTCTTTGATT
ATCTAGGGATTTTAAAGGGAGTTTTTCGAAAATTTTTGGTAGACTGACTATGAATCTTCT
GCTGACAACATTTTAAATTCCTAATTAAGCCTTACATGAGACTCAAACAAATATTTTTTC
ATCAAACAACAACTAATCAAAAAATTGTAAATAATTAAATTTTAGGTGTTTTAATAAAAG
AAAATTCAGTCATTGATTCATCAAATCTTCTCATCAATAAATTTCTCGAAAATGGAAAGA
AAGTTTTTATGGTTTCCAACAATAATCAAACCACTCGTGATGATTTATTAAAAAAATGTC
AGAATCTAAATTTCAATTTCACAATCGATAATATTTTTACATCATCTTCCATCACTGGAA
TGTATTTGAAATCTTTGAATTTTAATAAAAAAGCTTATGTGATTGGTTCAGAAGAATTAG
GAGAAGAATTGACAAAATTTGGTATTGAACATATTGGAATTGGAAGAGATGACATGAGTG
ACACTTATGGTGAATATATGATGAACAATTACAAACTTTATGAAGATGTTGGTGCTGTCA
TTGTGGGACTTGATAAATTTTTCAACATTCCTAAAATGCTCAAAGCAATGAATTATTTAA
AAAATCCTGAAATTTTATTTTTAGCAACAAATGTTGATGTGAGATCAGAATTTCCGAATT
TGATTTTTCCTGATGCAGGTCCAATAGTAGCTTCAATAGAAAAAGCTTCATATAGAAAAG
CAACAGTAATTGGAAAACCTTCATCAATTCTATTTGATTTATTAAAGCTCAAAAGTGATA
AAGAAAGAATTTTAATGATTGGTGACAGATTGAGTGTTGATATTGCTTTTGGAAAAAATT
CCGGAATTAAAACAATGCTTGTTGAAACTGGTGATGATAAAATGGAAAATGTTGGAGAAA
TTTTGAGAAAGATTGAGGAAAATGAAGAAAATCTAATACCTGATTATGTTGTAAAAAGTT
TAGGATTATTTTTGTAAAACAAACAACAACAGAATTACAAACTACTACAGAAAATTTATT
TTGTTGGGATGAAACCATTGAAGACTTAGTTTATTTCTTAAAAGGATTAAATCTACCTTT
AGAATTAAATTTATTGCAGACACAAAATCAACTAAACATTTTACAAAAGAAATTGACAGA
TTCAAAAATTTTAATAAATATTCTTCAACAAGAAATGATTAAAAAAATGGAAGCTTTTGA
TAAATTTCAAAATGATTTAGAGTAAGTATTTTCTCAAAAATTGAATGTTTCAACAGAAAA
TTCAAAAATTTGTTTATATTCAACTTTTCTTACATTTTTCTTAACAAGTTTTTCACT
>g17458.t6 Gene=g17458 Length=242
MVSNNNQTTRDDLLKKCQNLNFNFTIDNIFTSSSITGMYLKSLNFNKKAYVIGSEELGEE
LTKFGIEHIGIGRDDMSDTYGEYMMNNYKLYEDVGAVIVGLDKFFNIPKMLKAMNYLKNP
EILFLATNVDVRSEFPNLIFPDAGPIVASIEKASYRKATVIGKPSSILFDLLKLKSDKER
ILMIGDRLSVDIAFGKNSGIKTMLVETGDDKMENVGEILRKIEENEENLIPDYVVKSLGL
FL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g17458.t6 | Gene3D | G3DSA:3.40.50.1000 | - | 2 | 239 | 0 |
| 7 | g17458.t6 | Gene3D | G3DSA:3.40.50.1000 | - | 32 | 162 | 0 |
| 3 | g17458.t6 | PANTHER | PTHR19288 | 4-NITROPHENYLPHOSPHATASE-RELATED | 1 | 239 | 0 |
| 4 | g17458.t6 | PANTHER | PTHR19288:SF75 | FI11325P-RELATED | 1 | 239 | 0 |
| 1 | g17458.t6 | Pfam | PF13344 | Haloacid dehalogenase-like hydrolase | 2 | 67 | 0 |
| 2 | g17458.t6 | Pfam | PF13242 | HAD-hyrolase-like | 160 | 238 | 0 |
| 5 | g17458.t6 | SUPERFAMILY | SSF56784 | HAD-like | 2 | 238 | 0 |
| 8 | g17458.t6 | TIGRFAM | TIGR01460 | HAD-SF-IIA: HAD hydrolase, family IIA | 1 | 208 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
