General information for g17458.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphoglycolate phosphatase 2.
Parent gene
- The parent gene g17458 is located on chr_4: 13587661..13590155 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17458 | g17458.t7 | TSS | g17458.t7 | 13586560 | 13586560 |
| chr_4 | g17458 | g17458.t7 | isoform | g17458.t7 | 13586644 | 13589036 |
| chr_4 | g17458 | g17458.t7 | exon | g17458.t7.exon1 | 13586644 | 13586740 |
| chr_4 | g17458 | g17458.t7 | cds | g17458.t7.CDS1 | 13586644 | 13586740 |
| chr_4 | g17458 | g17458.t7 | exon | g17458.t7.exon2 | 13586989 | 13587354 |
| chr_4 | g17458 | g17458.t7 | cds | g17458.t7.CDS2 | 13586989 | 13587354 |
| chr_4 | g17458 | g17458.t7 | exon | g17458.t7.exon3 | 13587448 | 13587501 |
| chr_4 | g17458 | g17458.t7 | cds | g17458.t7.CDS3 | 13587448 | 13587501 |
| chr_4 | g17458 | g17458.t7 | exon | g17458.t7.exon4 | 13587593 | 13588135 |
| chr_4 | g17458 | g17458.t7 | cds | g17458.t7.CDS4 | 13587593 | 13587891 |
| chr_4 | g17458 | g17458.t7 | exon | g17458.t7.exon5 | 13588688 | 13589036 |
| chr_4 | g17458 | g17458.t7 | TTS | g17458.t7 | 13589073 | 13589073 |
Sequences
>g17458.t7 Gene=g17458 Length=1409
ATGAATTATAAAATTCCTGTGAACTTATCAAATTACCCAAAAGAAAGTCTACAAAAGTTT
TTTGATGATTTTGATGTAATTTTTACTGATTGTGACGGTGTTTTAATAAAAGAAAATTCA
GTCATTGATTCATCAAATCTTCTCATCAATAAATTTCTCGAAAATGGAAAGAAAGTTTTT
ATGGTTTCCAACAATAATCAAACCACTCGTGATGATTTATTAAAAAAATGTCAGAATCTA
AATTTCAATTTCACAATCGATAATATTTTTACATCATCTTCCATCACTGGAATGTATTTG
AAATCTTTGAATTTTAATAAAAAAGCTTATGTGATTGGTTCAGAAGAATTAGGAGAAGAA
TTGACAAAATTTGGTATTGAACATATTGGAATTGGAAGAGATGACATGAGTGACACTTAT
GGTGAATATATGATGAACAATTACAAACTTTATGAAGATGTTGCAACAAATGTTGATGTG
AGATCAGAATTTCCGAATTTGATTTTTCCTGATGCAGGTCCAATAGTAGCTTCAATAGAA
AAAGCTTCATATAGAAAAGCAACAGTAATTGGAAAACCTTCATCAATTCTATTTGATTTA
TTAAAGCTCAAAAGTGATAAAGAAAGAATTTTAATGATTGGTGACAGATTGAGTGTTGAT
ATTGCTTTTGGAAAAAATTCCGGAATTAAAACAATGCTTGTTGAAACTGGTGATGATAAA
ATGGAAAATGTTGGAGAAATTTTGAGAAAGATTGAGGAAAATGAAGAAAATCTAATACCT
GATTATGTTGTAAAAAGTTTAGGATTATTTTTGTAAAACAAACAACAACAGAATTACAAA
CTACTACAGAAAATTTATTTTGTTGGGATGAAACCATTGAAGACTTAGTTTATTTCTTAA
AAGGATTAAATCTACCTTTAGAATTAAATTTATTGCAGACACAAAATCAACTAAACATTT
TACAAAAGAAATTGACAGATTCAAAAATTTTAATAAATATTCTTCAACAAGAAATGATTA
AAAAAATGGAAGCTTTTGATAAATTTCAAAATGATTTAGAATGAAGTCGAAGTTTGTCTT
TTCGTCGTGGTGATGTTAGAAGAGTTTGAAAATGTTTCCATTGGGCATACTGTGAAAATA
AAAGTTTATAAAATAGATTAAGATTTTAAAATTCAAAAAAAATTTTCAACAAAACGAATT
TTAAAAACTCACATGGAAATTCATGATACAAACCGATCAAAACAATTAAAATGTAATAAA
TGTGATTATTCAACTTTTAAGAAAGGCGTATTAAAAACACATCAAAAAGCTCATGACTCT
GCTCGTTGTAAAATTTCAAATGTCACAACTGCAACTTTTCGACTAATAAAAAGGAATTTT
AAAAAACCATCATTTAATTCATAATAAAA
>g17458.t7 Gene=g17458 Length=271
MNYKIPVNLSNYPKESLQKFFDDFDVIFTDCDGVLIKENSVIDSSNLLINKFLENGKKVF
MVSNNNQTTRDDLLKKCQNLNFNFTIDNIFTSSSITGMYLKSLNFNKKAYVIGSEELGEE
LTKFGIEHIGIGRDDMSDTYGEYMMNNYKLYEDVATNVDVRSEFPNLIFPDAGPIVASIE
KASYRKATVIGKPSSILFDLLKLKSDKERILMIGDRLSVDIAFGKNSGIKTMLVETGDDK
MENVGEILRKIEENEENLIPDYVVKSLGLFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g17458.t7 | Gene3D | G3DSA:3.40.50.1000 | - | 26 | 268 | 0 |
| 9 | g17458.t7 | Gene3D | G3DSA:3.40.50.1000 | - | 92 | 191 | 0 |
| 4 | g17458.t7 | PANTHER | PTHR19288 | 4-NITROPHENYLPHOSPHATASE-RELATED | 18 | 132 | 0 |
| 6 | g17458.t7 | PANTHER | PTHR19288:SF75 | FI11325P-RELATED | 18 | 132 | 0 |
| 3 | g17458.t7 | PANTHER | PTHR19288 | 4-NITROPHENYLPHOSPHATASE-RELATED | 155 | 268 | 0 |
| 5 | g17458.t7 | PANTHER | PTHR19288:SF75 | FI11325P-RELATED | 155 | 268 | 0 |
| 10 | g17458.t7 | PIRSF | PIRSF000915 | PGP-type_phosphatase | 2 | 154 | 0 |
| 11 | g17458.t7 | PIRSF | PIRSF000915 | PGP-type_phosphatase | 139 | 271 | 0 |
| 1 | g17458.t7 | Pfam | PF13344 | Haloacid dehalogenase-like hydrolase | 27 | 127 | 0 |
| 2 | g17458.t7 | Pfam | PF13242 | HAD-hyrolase-like | 189 | 267 | 0 |
| 7 | g17458.t7 | SUPERFAMILY | SSF56784 | HAD-like | 23 | 267 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K01101 (4-nitrophenyl phosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed