General information for g17458.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glycerol-3-phosphate phosphatase.
Parent gene
- The parent gene g17458 is located on chr_4: 13587661..13590155 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17458 | g17458.t9 | TSS | g17458.t9 | 13586560 | 13586560 |
| chr_4 | g17458 | g17458.t9 | isoform | g17458.t9 | 13586644 | 13589036 |
| chr_4 | g17458 | g17458.t9 | exon | g17458.t9.exon1 | 13586644 | 13586740 |
| chr_4 | g17458 | g17458.t9 | exon | g17458.t9.exon2 | 13587126 | 13587501 |
| chr_4 | g17458 | g17458.t9 | cds | g17458.t9.CDS1 | 13587183 | 13587501 |
| chr_4 | g17458 | g17458.t9 | exon | g17458.t9.exon3 | 13587593 | 13588135 |
| chr_4 | g17458 | g17458.t9 | cds | g17458.t9.CDS2 | 13587593 | 13587891 |
| chr_4 | g17458 | g17458.t9 | exon | g17458.t9.exon4 | 13588688 | 13589036 |
| chr_4 | g17458 | g17458.t9 | TTS | g17458.t9 | 13589073 | 13589073 |
Sequences
>g17458.t9 Gene=g17458 Length=1365
ATGAATTATAAAATTCCTGTGAACTTATCAAATTACCCAAAAGAAAGTCTACAAAAGTTT
TTTGATGATTTTGATGTAATTTTTACTGATTGTGACGAATCTAAATTTCAATTTCACAAT
CGATAATATTTTTACATCATCTTCCATCACTGGAATGTATTTGAAATCTTTGAATTTTAA
TAAAAAAGCTTATGTGATTGGTTCAGAAGAATTAGGAGAAGAATTGACAAAATTTGGTAT
TGAACATATTGGAATTGGAAGAGATGACATGAGTGACACTTATGGTGAATATATGATGAA
CAATTACAAACTTTATGAAGATGTTGGTGCTGTCATTGTGGGACTTGATAAATTTTTCAA
CATTCCTAAAATGCTCAAAGCAATGAATTATTTAAAAAATCCTGAAATTTTATTTTTAGC
AACAAATGTTGATGTGAGATCAGAATTTCCGAATTTGATTTTTCCTGATGCAGGTCCAAT
AGTAGCTTCAATAGAAAAAGCTTCATATAGAAAAGCAACAGTAATTGGAAAACCTTCATC
AATTCTATTTGATTTATTAAAGCTCAAAAGTGATAAAGAAAGAATTTTAATGATTGGTGA
CAGATTGAGTGTTGATATTGCTTTTGGAAAAAATTCCGGAATTAAAACAATGCTTGTTGA
AACTGGTGATGATAAAATGGAAAATGTTGGAGAAATTTTGAGAAAGATTGAGGAAAATGA
AGAAAATCTAATACCTGATTATGTTGTAAAAAGTTTAGGATTATTTTTGTAAAACAAACA
ACAACAGAATTACAAACTACTACAGAAAATTTATTTTGTTGGGATGAAACCATTGAAGAC
TTAGTTTATTTCTTAAAAGGATTAAATCTACCTTTAGAATTAAATTTATTGCAGACACAA
AATCAACTAAACATTTTACAAAAGAAATTGACAGATTCAAAAATTTTAATAAATATTCTT
CAACAAGAAATGATTAAAAAAATGGAAGCTTTTGATAAATTTCAAAATGATTTAGAATGA
AGTCGAAGTTTGTCTTTTCGTCGTGGTGATGTTAGAAGAGTTTGAAAATGTTTCCATTGG
GCATACTGTGAAAATAAAAGTTTATAAAATAGATTAAGATTTTAAAATTCAAAAAAAATT
TTCAACAAAACGAATTTTAAAAACTCACATGGAAATTCATGATACAAACCGATCAAAACA
ATTAAAATGTAATAAATGTGATTATTCAACTTTTAAGAAAGGCGTATTAAAAACACATCA
AAAAGCTCATGACTCTGCTCGTTGTAAAATTTCAAATGTCACAACTGCAACTTTTCGACT
AATAAAAAGGAATTTTAAAAAACCATCATTTAATTCATAATAAAA
>g17458.t9 Gene=g17458 Length=205
MYLKSLNFNKKAYVIGSEELGEELTKFGIEHIGIGRDDMSDTYGEYMMNNYKLYEDVGAV
IVGLDKFFNIPKMLKAMNYLKNPEILFLATNVDVRSEFPNLIFPDAGPIVASIEKASYRK
ATVIGKPSSILFDLLKLKSDKERILMIGDRLSVDIAFGKNSGIKTMLVETGDDKMENVGE
ILRKIEENEENLIPDYVVKSLGLFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g17458.t9 | Gene3D | G3DSA:3.40.50.1000 | - | 1 | 122 | 0.0e+00 |
| 5 | g17458.t9 | Gene3D | G3DSA:3.40.50.1000 | - | 123 | 196 | 9.6e-06 |
| 2 | g17458.t9 | PANTHER | PTHR19288 | 4-NITROPHENYLPHOSPHATASE-RELATED | 1 | 202 | 0.0e+00 |
| 3 | g17458.t9 | PANTHER | PTHR19288:SF75 | FI11325P-RELATED | 1 | 202 | 0.0e+00 |
| 1 | g17458.t9 | Pfam | PF13242 | HAD-hyrolase-like | 123 | 201 | 0.0e+00 |
| 4 | g17458.t9 | SUPERFAMILY | SSF56784 | HAD-like | 2 | 201 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
