Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17468 g17468.t3 isoform g17468.t3 13613476 13615056
chr_4 g17468 g17468.t3 exon g17468.t3.exon1 13613476 13613887
chr_4 g17468 g17468.t3 TTS g17468.t3 13613486 13613486
chr_4 g17468 g17468.t3 cds g17468.t3.CDS1 13613861 13613887
chr_4 g17468 g17468.t3 exon g17468.t3.exon2 13613946 13614059
chr_4 g17468 g17468.t3 cds g17468.t3.CDS2 13613946 13614059
chr_4 g17468 g17468.t3 exon g17468.t3.exon3 13614117 13614615
chr_4 g17468 g17468.t3 cds g17468.t3.CDS3 13614117 13614422
chr_4 g17468 g17468.t3 exon g17468.t3.exon4 13614679 13614736
chr_4 g17468 g17468.t3 exon g17468.t3.exon5 13614881 13615056
chr_4 g17468 g17468.t3 TSS g17468.t3 NA NA

Sequences

>g17468.t3 Gene=g17468 Length=1259
AGTACATATTAGTCATTGCTAAAGCTCACAATGAATTTAAAATTCTTATTTTTTATTTTT
ATTTTTTATAGAGTTTTCTTTCTGTAAGAAATTTCCTATTGTTGTTAGTACTTGGGATTT
TACAAATTCGACGATAAAAGCTTTTGAAGTTTTTGAATCAAAAAGGAAAAACTGCTATTG
ATGCAGTAGTTGAAGGTTGTGCAATATGTGAAGAGCAATGTGAAGGAAGTGTTGGTTGGG
GTGGATCACCAAATGAAGAAGGTGAAACGACACTCGATGCAATGGTAATGGATGGAAAAA
CAATGAAAGTTGGAGCAGTTGGTGGTCTTCGATTTATAAAGAAGCAATTGCTGTTGCACG
TCATGTTTTTCAATATACAAAGCATACTTTATTAGTTGGTGATCAAGCGACAGAATTTGC
TGTCAAAATGGGCTTTGAAAAACAAAATTTATCAATGACGAACATTAATGAATATATGGA
TGATTGGAAAAATAAAAGTTGTCAGCCAAATAATTGGATAAATGTTCATCCAGATCCTAG
TAAAAATTGCGGTCCTTATACAAAGAATGAAAATATTGCTGATAATGAAGTTAAAGTAAA
TTTAATTGATGAAAAAAATCATGATACAATTGGAATAATTGCAATTGATGAAGATGAAAA
TATTGCTGTTGGAACTTCTACGAACGGAATGACTTATAAAATACCTGGAAGAGTCGGTGA
TTCTCCTATTCCTGGATCTGGCGGTTATGCAGATAATAAAGTAGGTGGTGCAGCAGCAAC
AGGTGATGGTGATGTAATGATGAGATTTTCAGCTTCATTTCTTGCTGTTGAGCTCATGAG
AAATGGAAAAGCAGTGCTGCAATTGTTGTATTAGATAAAGATGGAAATTATGGATTTGCT
TGTCAAATTTTTAGTTATTTTTCAATTTCTATTTATCATCCTGAACTAGATAAAGTTAAA
ATTGAAGAGACAAAATGCAGGCAAATTGGTGATCCAATAACTACAACAACTAGCGCTGCA
TTTAGAATTCATTTTAATAGCATTATTTTGTTTTTTATTACATTTTTATTAGGAATGATA
TAATTAAAGGGAAAGAACTCTTAATAATTAAAATAGAGTAACCCGTTGAAAAACAAAAAA
AAAATTGTATGATACTTTAAAAAGTTTTCTTGTTAATTTGATGACTTTTTTGATATCAAA
ATTTCATGGTTTTTAAAAGGAAATAATAAAGTAGATTTGTTTGGAAATTAAAAATATAT

>g17468.t3 Gene=g17468 Length=148
MGFEKQNLSMTNINEYMDDWKNKSCQPNNWINVHPDPSKNCGPYTKNENIADNEVKVNLI
DEKNHDTIGIIAIDEDENIAVGTSTNGMTYKIPGRVGDSPIPGSGGYADNKVGGAAATGD
GDVMMRFSASFLAVELMRNGKAVLQLLY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g17468.t3 Gene3D G3DSA:3.60.20.30 (Glycosyl)asparaginase 67 147 0
2 g17468.t3 PANTHER PTHR10188:SF6 N(4)-(BETA-N-ACETYLGLUCOSAMINYL)-L-ASPARAGINASE 1 141 0
3 g17468.t3 PANTHER PTHR10188 L-ASPARAGINASE 1 141 0
1 g17468.t3 Pfam PF01112 Asparaginase 4 142 0
4 g17468.t3 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 143 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed