General information for g17468.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17468 is located on chr_4: 13613652..13615056 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17468 | g17468.t4 | isoform | g17468.t4 | 13613476 | 13615056 |
| chr_4 | g17468 | g17468.t4 | exon | g17468.t4.exon1 | 13613476 | 13614615 |
| chr_4 | g17468 | g17468.t4 | TTS | g17468.t4 | 13613486 | 13613486 |
| chr_4 | g17468 | g17468.t4 | cds | g17468.t4.CDS1 | 13613652 | 13613996 |
| chr_4 | g17468 | g17468.t4 | exon | g17468.t4.exon2 | 13614679 | 13614736 |
| chr_4 | g17468 | g17468.t4 | exon | g17468.t4.exon3 | 13614881 | 13615056 |
| chr_4 | g17468 | g17468.t4 | TSS | g17468.t4 | NA | NA |
Sequences
>g17468.t4 Gene=g17468 Length=1374
AGTACATATTAGTCATTGCTAAAGCTCACAATGAATTTAAAATTCTTATTTTTTATTTTT
ATTTTTTATAGAGTTTTCTTTCTGTAAGAAATTTCCTATTGTTGTTAGTACTTGGGATTT
TACAAATTCGACGATAAAAGCTTTTGAAGTTTTTGAATCAAAAAGGAAAAACTGCTATTG
ATGCAGTAGTTGAAGGTTGTGCAATATGTGAAGAGCAATGTGAAGGAAGTGTTGGTTGGG
GTGGATCACCAAATGAAGAAGGTGAAACGACACTCGATGCAATGGTAATGGATGGAAAAA
CAATGAAAGTTGGAGCAGTTGGTGGTCTTCGATTTATAAAGAAGCAATTGCTGTTGCACG
TCATGTTTTTCAATATACAAAGCATACTTTATTAGTTGGTGATCAAGCGACAGAATTTGC
TGTCAAAATGGGCTTTGAAAAACAAAATTTATCAATGACGAACATTAATGAATATATGGA
TGATTGGAAAAATAAAAGTTGTCAGCCAAATAATTGGATAAATGTTCATCCAGATCCTAG
TAAAAATTGCGGTCCTTATACAAAGAATGAAAATATTGCTGATAATGAAGTTAAAGTAAA
TTTAATTGATGAAAAAAATCATGATACAATTGGAATAATTGCAATTGATGAAGATGAAAA
TATTGCTGTTGGAACTTCTACGAACGGAATGACTTATAAAATACCTGGAAGAGTCGGTGA
TTCTCCTATTCCTGTGAGTTTATTAAATTTTTAAATTGCTAAAATGATATTAAAAAGTTT
AAATTTTTAGGGATCTGGCGGTTATGCAGATAATAAAGTAGGTGGTGCAGCAGCAACAGG
TGATGGTGATGTAATGATGAGATTTTCAGCTTCATTTCTTGCTGTTGAGCTCATGAGAAA
TGGAAAAACACCACAAGAAGCTGCTGAATTGGTTATTGCAAGAATTGGTGAATTTTATCC
AGAAAGCAGTGCTGCAATTGTTGTATTAGATAAAGATGGAAATTATGGATTTGCTTGTCA
AATTTTTAGTTATTTTTCAATTTCTATTTATCATCCTGAACTAGATAAAGTTAAAATTGA
AGAGACAAAATGCAGGCAAATTGGTGATCCAATAACTACAACAACTAGCGCTGCATTTAG
AATTCATTTTAATAGCATTATTTTGTTTTTTATTACATTTTTATTAGGAATGATATAATT
AAAGGGAAAGAACTCTTAATAATTAAAATAGAGTAACCCGTTGAAAAACAAAAAAAAAAT
TGTATGATACTTTAAAAAGTTTTCTTGTTAATTTGATGACTTTTTTGATATCAAAATTTC
ATGGTTTTTAAAAGGAAATAATAAAGTAGATTTGTTTGGAAATTAAAAATATAT
>g17468.t4 Gene=g17468 Length=114
MMRFSASFLAVELMRNGKTPQEAAELVIARIGEFYPESSAAIVVLDKDGNYGFACQIFSY
FSISIYHPELDKVKIEETKCRQIGDPITTTTSAAFRIHFNSIILFFITFLLGMI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g17468.t4 | Gene3D | G3DSA:3.60.20.30 | (Glycosyl)asparaginase | 1 | 81 | 2.6E-13 |
| 2 | g17468.t4 | PANTHER | PTHR10188:SF6 | N(4)-(BETA-N-ACETYLGLUCOSAMINYL)-L-ASPARAGINASE | 1 | 75 | 1.3E-12 |
| 3 | g17468.t4 | PANTHER | PTHR10188 | L-ASPARAGINASE | 1 | 75 | 1.3E-12 |
| 1 | g17468.t4 | Pfam | PF01112 | Asparaginase | 1 | 68 | 3.1E-6 |
| 8 | g17468.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
| 9 | g17468.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 10 | g17468.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 11 | - |
| 12 | g17468.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 23 | - |
| 7 | g17468.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 92 | - |
| 11 | g17468.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 93 | 113 | - |
| 6 | g17468.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 114 | 114 | - |
| 4 | g17468.t4 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 1 | 69 | 6.69E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed