Gene loci information

Transcript annotation

  • This transcript has been annotated as N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17470 g17470.t7 TTS g17470.t7 13619495 13619495
chr_4 g17470 g17470.t7 isoform g17470.t7 13620535 13621917
chr_4 g17470 g17470.t7 exon g17470.t7.exon1 13620535 13620891
chr_4 g17470 g17470.t7 cds g17470.t7.CDS1 13620535 13620891
chr_4 g17470 g17470.t7 exon g17470.t7.exon2 13620947 13621443
chr_4 g17470 g17470.t7 cds g17470.t7.CDS2 13620947 13621443
chr_4 g17470 g17470.t7 exon g17470.t7.exon3 13621522 13621582
chr_4 g17470 g17470.t7 cds g17470.t7.CDS3 13621522 13621582
chr_4 g17470 g17470.t7 exon g17470.t7.exon4 13621744 13621917
chr_4 g17470 g17470.t7 cds g17470.t7.CDS4 13621744 13621887
chr_4 g17470 g17470.t7 TSS g17470.t7 13621917 13621917

Sequences

>g17470.t7 Gene=g17470 Length=1089
AGTTCATATTAGTCATTGCTAAAGCTCACAATGAATTTTAAAATTCTCATTTTATTTTTA
TTTTTTATTGAACTTTCTTTTTGTAAGAAATTTCCAATTGTTGTTAACACTTGGGATTTT
ACAAATGCAACAATTAAAGCTTTTGAAGTCTTGAATCAAAAAGGAAAAACTGTTATTGAT
GCAGTAGTTGAAGGTTGCACAATTTGTGAAGAGCAGCAATGTGATGGAAGTGTTGGATTT
GGTGGATCACCAAATGAAGAAGGTGAAACGACACTCGATGCAATGGTAATGGATGGAAAA
ACAATGAAAGTTGGAGCAGTTGGTGGTCTTCGTTACATTAAAGATGCAATTGCTGTTGCA
CGTCATGTTTTTCAATATACAAAACACACATTATTAGTTGGTGATCAAGCGACAGAATTT
GCTGTCAAAATGGGCTTTGAAAAACAAAATTTATCAATGACAAACATTAATGAATTTATG
GATGATTGGAAAAATAAAAGTTGTCAACCTAATTACTGGATGAATGTTCTTGATTCTGAA
CATAAATGTGGTCCTTATGAGAAAAATGAAAATATTGCTGGAAATGAAATTAAAGTGACT
TTAGTTGATAACAGAAATCATGATACGATTGGAATGATTGCAATTGATGAAGACGGAAAT
ATTGCTGTTGGAACTTCTACTAATGGATTAACTTATAAACTACCTGGAAGAGTCGGTGAC
ACTCCTATTGTTGGATCTGGTGGTTATGCAGATAATAAAGTAGGAGGTGCAGCAGCAACA
GGTGATGGTGATGTAATGATGAGATTTTCAGCTTCTTTTCTTGCTGTTGAGCTCATGAGG
AATGGAAAAACACCACAAGAAGCTGCAGACTTGGTTATTGCAAGAATTGCTGAATATTTT
CCTGATAGCATAGCTGCAATTGTAGTATTAGATAAAGATGGAAATTATGGATCTGCTTGT
CAAATTTTTGAATCTTTTCCTATTTCTATTTATAATTCTGAACTAGATAAAGTTAAAATT
GAAGAGACAAAATGTAGACAAATTAATGAACAAATTACAACAACGACTGGAGCTGCATTT
AGAATTTAT

>g17470.t7 Gene=g17470 Length=353
MNFKILILFLFFIELSFCKKFPIVVNTWDFTNATIKAFEVLNQKGKTVIDAVVEGCTICE
EQQCDGSVGFGGSPNEEGETTLDAMVMDGKTMKVGAVGGLRYIKDAIAVARHVFQYTKHT
LLVGDQATEFAVKMGFEKQNLSMTNINEFMDDWKNKSCQPNYWMNVLDSEHKCGPYEKNE
NIAGNEIKVTLVDNRNHDTIGMIAIDEDGNIAVGTSTNGLTYKLPGRVGDTPIVGSGGYA
DNKVGGAAATGDGDVMMRFSASFLAVELMRNGKTPQEAADLVIARIAEYFPDSIAAIVVL
DKDGNYGSACQIFESFPISIYNSELDKVKIEETKCRQINEQITTTTGAAFRIY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g17470.t7 CDD cd04513 Glycosylasparaginase 23 322 2.52657E-167
6 g17470.t7 Gene3D G3DSA:3.60.20.30 (Glycosyl)asparaginase 199 336 3.3E-49
2 g17470.t7 PANTHER PTHR10188:SF6 N(4)-(BETA-N-ACETYLGLUCOSAMINYL)-L-ASPARAGINASE 18 330 2.3E-135
3 g17470.t7 PANTHER PTHR10188 L-ASPARAGINASE 18 330 2.3E-135
1 g17470.t7 Pfam PF01112 Asparaginase 30 328 3.3E-81
8 g17470.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
9 g17470.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
10 g17470.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 13 -
11 g17470.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 18 -
7 g17470.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 353 -
4 g17470.t7 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 21 321 2.83E-89
5 g17470.t7 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values