General information for g17476.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 62-like protein.
Parent gene
- The parent gene g17476 is located on chr_4: 13646879..13655602 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17476 | g17476.t1 | TSS | g17476.t1 | 13644716 | 13644716 |
| chr_4 | g17476 | g17476.t1 | isoform | g17476.t1 | 13644782 | 13646879 |
| chr_4 | g17476 | g17476.t1 | exon | g17476.t1.exon1 | 13644782 | 13644922 |
| chr_4 | g17476 | g17476.t1 | cds | g17476.t1.CDS1 | 13644782 | 13644922 |
| chr_4 | g17476 | g17476.t1 | exon | g17476.t1.exon2 | 13645032 | 13645499 |
| chr_4 | g17476 | g17476.t1 | cds | g17476.t1.CDS2 | 13645032 | 13645499 |
| chr_4 | g17476 | g17476.t1 | exon | g17476.t1.exon3 | 13645566 | 13645590 |
| chr_4 | g17476 | g17476.t1 | cds | g17476.t1.CDS3 | 13645566 | 13645590 |
| chr_4 | g17476 | g17476.t1 | exon | g17476.t1.exon4 | 13645746 | 13646093 |
| chr_4 | g17476 | g17476.t1 | cds | g17476.t1.CDS4 | 13645746 | 13646093 |
| chr_4 | g17476 | g17476.t1 | exon | g17476.t1.exon5 | 13646317 | 13646477 |
| chr_4 | g17476 | g17476.t1 | cds | g17476.t1.CDS5 | 13646317 | 13646477 |
| chr_4 | g17476 | g17476.t1 | exon | g17476.t1.exon6 | 13646634 | 13646879 |
| chr_4 | g17476 | g17476.t1 | cds | g17476.t1.CDS6 | 13646634 | 13646879 |
| chr_4 | g17476 | g17476.t1 | TTS | g17476.t1 | 13646923 | 13646923 |
Sequences
>g17476.t1 Gene=g17476 Length=1389
ATGGCACAAGAAACGATAATAGGACTTGATAATCATTTACTAAAGTGTCGATGTTGTTTG
AAAGAATTTGATGAAGAAGATACACAAATTAAAATTACGAAAATAATTAGAGAAAGATTT
TTGCAATTGACGCAAATTGAATTAAAACCATCAGAAATTTATTCCCATGTAATCTGTGAG
TCCTGCAATAATGAACTTCGTTCCTTTTCATCATTTCGCAAAGATCTCATTTTCAAGCAA
CTCAGTTTACTCCAATTTGTCGAAGGTGTCGAAGAAGTTCAAGAAGACCAAGATATTGAA
ATAACTTATGGCAATGAAAATATCACAAATGAATATATGGAAGTTAAAGCAGAAAATTTT
GAAGAATCACAAGTTTTAACCGAAGATTACACAAATTTTGTCTCAGCTGAATATCTTGAA
AGTTTTACAGAAGAAGCTGTAATTGAATGTGTTGAAAATACTGGAGAAGAAATTTTTGAA
GGAAATATTGAGGCTTTAGGAAACTATAAAAGAAAATTTTCATCATCAGCTAAGAAATTT
TATAAAAGAGCACTTTGTGGTTTGTGTGGAAAAAGTTATTACAAAGATCAGCTGCAAAGG
CATATTGATAAAGTTCATTACAAAGTCAAAAGATATTTCTGTGACATTTGCGGCTTTGGT
TCTTTCCTAAAATGCAACTTACAAACTCACATGGGAAAACACATTGCTCGAGAATTTCGT
GAACAAATTAAATGTGACCTTTGTGATTCAACTTTTACTCGTCATGAAAGTCTTAAAAAT
CATATGAAAACAGAACATGAAACTCCAGTGATGTTGAAATGTTTTTGTGGAAAAGAATTT
AATTTAAGGCATAAGTTGACAACACACATTAAAAGAACTCATAATAATGTTAGAAATCAT
GAATGCAAATTTTGTGAGAAAAAATTTTTTACACCAAAGGAAATGAAAGTTCATGTTTTG
AAAGTTCATACTCCTGGTTATGTCGACATGTCCGAACATTTCTGTGAAATTTGTGGTAAA
AAGTATTCAAGTACAAAGAGTCTAAAAACACACATGAAGCATCACAGTGAAGCTCAATTT
AAATGTAATTTTGACGGATGCAATAAAGCTTTTATTACAAAACTTTTATTAGCAAATCAT
GAAAAAACTCATCTCGGTCAGCGCGATTTCATGTGTCATTTGTGTGAAAAAAGTTTTTTC
TCAGCAAATCATCTTAAGAGGCATATTGTAGTATCACATGATAAAATAAAAGTCAATTGC
TTTGTTGAAGGTTGTCGATTTTCTGTTGGACGAAAAGATTATCTTAGGAATCACATTCTT
ACTCACCGAGACTTACCAGAAGATGTTAAAAATGCATTTTTAGTTAAAATTAGAGACATG
AAATTTTAA
>g17476.t1 Gene=g17476 Length=462
MAQETIIGLDNHLLKCRCCLKEFDEEDTQIKITKIIRERFLQLTQIELKPSEIYSHVICE
SCNNELRSFSSFRKDLIFKQLSLLQFVEGVEEVQEDQDIEITYGNENITNEYMEVKAENF
EESQVLTEDYTNFVSAEYLESFTEEAVIECVENTGEEIFEGNIEALGNYKRKFSSSAKKF
YKRALCGLCGKSYYKDQLQRHIDKVHYKVKRYFCDICGFGSFLKCNLQTHMGKHIAREFR
EQIKCDLCDSTFTRHESLKNHMKTEHETPVMLKCFCGKEFNLRHKLTTHIKRTHNNVRNH
ECKFCEKKFFTPKEMKVHVLKVHTPGYVDMSEHFCEICGKKYSSTKSLKTHMKHHSEAQF
KCNFDGCNKAFITKLLLANHEKTHLGQRDFMCHLCEKSFFSANHLKRHIVVSHDKIKVNC
FVEGCRFSVGRKDYLRNHILTHRDLPEDVKNAFLVKIRDMKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 39 | g17476.t1 | Gene3D | G3DSA:3.40.1800.20 | - | 14 | 87 | 1.5E-5 |
| 35 | g17476.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 181 | 234 | 4.5E-6 |
| 38 | g17476.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 242 | 270 | 1.3E-5 |
| 37 | g17476.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 271 | 332 | 5.6E-8 |
| 36 | g17476.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 333 | 355 | 1.4E-5 |
| 33 | g17476.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 356 | 381 | 2.3E-5 |
| 34 | g17476.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 382 | 451 | 1.1E-9 |
| 7 | g17476.t1 | PANTHER | PTHR24390:SF164 | IP01252P-RELATED | 15 | 318 | 1.3E-46 |
| 10 | g17476.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 15 | 318 | 1.3E-46 |
| 6 | g17476.t1 | PANTHER | PTHR24390:SF164 | IP01252P-RELATED | 226 | 371 | 1.3E-46 |
| 9 | g17476.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 226 | 371 | 1.3E-46 |
| 5 | g17476.t1 | PANTHER | PTHR24390:SF164 | IP01252P-RELATED | 301 | 442 | 1.3E-46 |
| 8 | g17476.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 301 | 442 | 1.3E-46 |
| 1 | g17476.t1 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 16 | 81 | 1.6E-6 |
| 2 | g17476.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 244 | 266 | 0.0011 |
| 4 | g17476.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 360 | 384 | 0.0081 |
| 3 | g17476.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 390 | 413 | 0.0035 |
| 32 | g17476.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 245 | 266 | - |
| 28 | g17476.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 302 | 323 | - |
| 30 | g17476.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 335 | 355 | - |
| 29 | g17476.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 362 | 384 | - |
| 31 | g17476.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 392 | 413 | - |
| 40 | g17476.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 243 | 266 | 9.702 |
| 44 | g17476.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 300 | 324 | 8.704 |
| 43 | g17476.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 333 | 360 | 10.637 |
| 42 | g17476.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 360 | 389 | 12.383 |
| 41 | g17476.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 390 | 418 | 10.512 |
| 18 | g17476.t1 | SMART | SM00868 | zf_AD_2 | 15 | 86 | 0.011 |
| 20 | g17476.t1 | SMART | SM00355 | c2h2final6 | 184 | 206 | 28.0 |
| 24 | g17476.t1 | SMART | SM00355 | c2h2final6 | 212 | 234 | 0.17 |
| 19 | g17476.t1 | SMART | SM00355 | c2h2final6 | 243 | 266 | 0.0019 |
| 23 | g17476.t1 | SMART | SM00355 | c2h2final6 | 272 | 294 | 30.0 |
| 26 | g17476.t1 | SMART | SM00355 | c2h2final6 | 300 | 323 | 0.03 |
| 27 | g17476.t1 | SMART | SM00355 | c2h2final6 | 333 | 355 | 0.024 |
| 17 | g17476.t1 | SMART | SM00868 | zf_AD_2 | 334 | 419 | 2.8 |
| 22 | g17476.t1 | SMART | SM00355 | c2h2final6 | 360 | 384 | 0.0018 |
| 21 | g17476.t1 | SMART | SM00355 | c2h2final6 | 390 | 413 | 0.018 |
| 25 | g17476.t1 | SMART | SM00355 | c2h2final6 | 418 | 442 | 3.5 |
| 11 | g17476.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 16 | 85 | 1.13E-5 |
| 16 | g17476.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 183 | 235 | 1.8E-6 |
| 13 | g17476.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 243 | 291 | 3.39E-6 |
| 15 | g17476.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 298 | 355 | 1.1E-6 |
| 12 | g17476.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 342 | 399 | 4.48E-11 |
| 14 | g17476.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 389 | 442 | 3.44E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
