Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17482 g17482.t120 isoform g17482.t120 13658653 13659248
chr_4 g17482 g17482.t120 exon g17482.t120.exon1 13658653 13659083
chr_4 g17482 g17482.t120 cds g17482.t120.CDS1 13659022 13659083
chr_4 g17482 g17482.t120 exon g17482.t120.exon2 13659155 13659248
chr_4 g17482 g17482.t120 cds g17482.t120.CDS2 13659155 13659248
chr_4 g17482 g17482.t120 TTS g17482.t120 13659279 13659279
chr_4 g17482 g17482.t120 TSS g17482.t120 NA NA

Sequences

>g17482.t120 Gene=g17482 Length=525
CTAAAAAAATTTAAAATTTTTGTTTTTAGTGAAAAAATCGTTAAAAGAAAGTCACCAGTA
AAAAGCTACAATTATGATGCAGTAAATCTCAGTAAATATTGGAAATCGGGCGATGAACCA
AGAGTTTATCATCATACAGTTTGCTCAACATTACTCTACGGTTTGCGAGAGGCAATTGCA
ATTTTCATTGAGAATGGTGGTTTAGAAGCTTCTTGGAAAAATCATCAAAATGTTGCCAAA
CATTTTTATACTCTGTTGGAAAAGAATGGTTTGGAATTATTCATTACTGATCCTAAAAAT
CGTGTTCCATCAGTTACAGCTGTAAAAGTTCCTGAGAATATCGATGCAAATGAAATTATA
AAACATTCAATGAATGAATATAATGTTGAAATCAGTGGTGGAATGGGACAAACTAAAGGA
AAAATTTTAAGAGTTGGACTTATGGGAATAAATTGTAAAGAAATCGTTGCAGAATGCGTT
GCAAAAATTCTTATTGAAGCAACGAGAAAGTTGAATGAAGAATAA

>g17482.t120 Gene=g17482 Length=51
MNEYNVEISGGMGQTKGKILRVGLMGINCKEIVAECVAKILIEATRKLNEE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g17482.t120 Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase 1 50 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed