General information for g17482.t121
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17482 is located on chr_4: 13658711..13665993 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17482 | g17482.t121 | isoform | g17482.t121 | 13658711 | 13665993 |
| chr_4 | g17482 | g17482.t121 | exon | g17482.t121.exon1 | 13658711 | 13659083 |
| chr_4 | g17482 | g17482.t121 | cds | g17482.t121.CDS1 | 13659022 | 13659083 |
| chr_4 | g17482 | g17482.t121 | exon | g17482.t121.exon2 | 13659155 | 13659284 |
| chr_4 | g17482 | g17482.t121 | cds | g17482.t121.CDS2 | 13659155 | 13659248 |
| chr_4 | g17482 | g17482.t121 | TTS | g17482.t121 | 13659279 | 13659279 |
| chr_4 | g17482 | g17482.t121 | exon | g17482.t121.exon3 | 13665983 | 13665993 |
| chr_4 | g17482 | g17482.t121 | TSS | g17482.t121 | NA | NA |
Sequences
>g17482.t121 Gene=g17482 Length=514
TAAAAAGCTACAATTATGATGCAGTAAATCTCAGTAAATATTGGAAATCGGGCGATGAAC
CAAGAGTTTATCATCATACAGTTTGCTCAACATTACTCTACGGTTTGCGAGAGGCAATTG
CAATTTTCATTGAGAATGGTGGTTTAGAAGCTTCTTGGAAAAATCATCAAAATGTTGCCA
AACATTTTTATACTCTGTTGGAAAAGAATGGTTTGGAATTATTCATTACTGATCCTAAAA
ATCGTGTTCCATCAGTTACAGCTGTAAAAGTTCCTGAGAATATCGATGCAAATGAAATTA
TAAAACATTCAATGAATGAATATAATGTTGAAATCAGTGGTGGAATGGGACAAACTAAAG
GAAAAATTTTAAGAGTTGGACTTATGGGAATAAATTGTAAAGAAATCGTTGCAGAATGCG
TTGCAAAAATTCTTATTGAAGCAACGAGAAAGTTGAATGAAGAATAAAAATAAATTAATA
ACAACATTATTTAAATCATAAAAAACCTATATGA
>g17482.t121 Gene=g17482 Length=51
MNEYNVEISGGMGQTKGKILRVGLMGINCKEIVAECVAKILIEATRKLNEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g17482.t121 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 1 | 50 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
