General information for g17483.t84
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17483 is located on chr_4: 13661346..13669405 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17483 | g17483.t84 | isoform | g17483.t84 | 13660794 | 13661351 |
| chr_4 | g17483 | g17483.t84 | exon | g17483.t84.exon1 | 13660794 | 13661195 |
| chr_4 | g17483 | g17483.t84 | cds | g17483.t84.CDS1 | 13661134 | 13661195 |
| chr_4 | g17483 | g17483.t84 | exon | g17483.t84.exon2 | 13661253 | 13661351 |
| chr_4 | g17483 | g17483.t84 | cds | g17483.t84.CDS2 | 13661253 | 13661346 |
| chr_4 | g17483 | g17483.t84 | TTS | g17483.t84 | 13661511 | 13661511 |
| chr_4 | g17483 | g17483.t84 | TSS | g17483.t84 | NA | NA |
Sequences
>g17483.t84 Gene=g17483 Length=501
GGATAAAATTGCAAAGAGAAAGACACCAGTAAAAAGCTATAATCTTGATGCAGTAAACCT
TGGTGAATATTGGAATTCTGGAAACCGTCCAAGAATTTATCATCATACAGTTTGTTCAAC
ATTACTCTACGGTTTGCGAGAGGCAATTGCAATTTTCATTGAGAATGGTGGTTTAGAAGC
TTCTTGGAAAAATCATGAAAATGTTGCCAAACATTTTTATACTCTGTTGGAAAAGAATGG
TTTGGAATTATTCATTACTGATCCTAAAAATCGTGTTCCATCAGTTACAGCTATAAAAGT
ACCTGAGAATATCGATGCAAATGAAATTATAAAACATTCAATGAATGAATACAATGTTGA
AATTAGTGGTGGTATAGGACCAATGTTGGGGGTAGTTTTGAGAGTTGGACTAATGGGAAT
AAACTGTAATGAAAAAGTTGCAGAATGCGTTGCAAAAATTCTTATTGAAGCTATAAAAAA
AATGAAAGAAGAATAAAAATA
>g17483.t84 Gene=g17483 Length=51
MNEYNVEISGGIGPMLGVVLRVGLMGINCNEKVAECVAKILIEAIKKMKEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g17483.t84 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 1 | 51 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
