General information for g17501.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Thioredoxin.
Parent gene
- The parent gene g17501 is located on chr_4: 13686270..13686758 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17501 | g17501.t1 | TTS | g17501.t1 | 13686090 | 13686090 |
| chr_4 | g17501 | g17501.t1 | isoform | g17501.t1 | 13686270 | 13686758 |
| chr_4 | g17501 | g17501.t1 | exon | g17501.t1.exon1 | 13686270 | 13686428 |
| chr_4 | g17501 | g17501.t1 | cds | g17501.t1.CDS1 | 13686270 | 13686428 |
| chr_4 | g17501 | g17501.t1 | exon | g17501.t1.exon2 | 13686498 | 13686758 |
| chr_4 | g17501 | g17501.t1 | cds | g17501.t1.CDS2 | 13686498 | 13686758 |
| chr_4 | g17501 | g17501.t1 | TSS | g17501.t1 | 13686787 | 13686787 |
Sequences
>g17501.t1 Gene=g17501 Length=420
ATGGAAATGTTGGGAAATGTTGCAAAATTATTTACATTTAGATCAGCTGGAAGTCCAATA
CGAAGAAATATTACAGCAACAGCAAAATTATCATATATTTTTAAAATTGAAGATGAGAGA
GAATTTAACGATAAAGTGCTTAATGCAAGAACTCCAGTAATTGTTGAGTTTTTTGCAAAG
TGGTGCAATTTATGCAAAATGCAAAAACCAAAAGCTGAACAAGTTGTAAAAGAATTTGAT
GGAAAAATTTCGTTGGCGGAAGTTGACATTGATGAAACCAAAGAAATAAAAGAAAAATAT
GGAATAAAAACTGTACCGGTCTTAGCAGTGTATCGCGATGGGAATATTGTTAAAATTTTA
CCAGGCATGCATGAAGCAGATGAAATAAAACAATTTATTAGATTGCAACTTGGAGAGTAA
>g17501.t1 Gene=g17501 Length=139
MEMLGNVAKLFTFRSAGSPIRRNITATAKLSYIFKIEDEREFNDKVLNARTPVIVEFFAK
WCNLCKMQKPKAEQVVKEFDGKISLAEVDIDETKEIKEKYGIKTVPVLAVYRDGNIVKIL
PGMHEADEIKQFIRLQLGE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g17501.t1 | CDD | cd02947 | TRX_family | 41 | 133 | 0.000 |
| 4 | g17501.t1 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 23 | 135 | 0.000 |
| 2 | g17501.t1 | PANTHER | PTHR45663 | GEO12009P1 | 20 | 133 | 0.000 |
| 1 | g17501.t1 | Pfam | PF00085 | Thioredoxin | 38 | 134 | 0.000 |
| 5 | g17501.t1 | ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 2 | 138 | 12.747 |
| 3 | g17501.t1 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 37 | 137 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K03671 (thioredoxin 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
