General information for g17533.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cyclin-dependent kinase 9.
Parent gene
- The parent gene g17533 is located on chr_4: 13803714..13804665 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17533 | g17533.t2 | isoform | g17533.t2 | 13801375 | 13802672 |
| chr_4 | g17533 | g17533.t2 | exon | g17533.t2.exon1 | 13801375 | 13802672 |
| chr_4 | g17533 | g17533.t2 | TTS | g17533.t2 | 13801720 | 13801720 |
| chr_4 | g17533 | g17533.t2 | cds | g17533.t2.CDS1 | 13802136 | 13802609 |
| chr_4 | g17533 | g17533.t2 | TSS | g17533.t2 | NA | NA |
Sequences
>g17533.t2 Gene=g17533 Length=1298
GAACTATTGCTTGGTGATCGAAGTTATTCGACTGCTATTGATTTATGGAGTGTTGGTTGT
ATTATGGCTGAAATGTGGACAAGACATGCAATTATGAAAGGTGAAAGTGAAGTGAAGCAA
TTAGAAATATGTGAAAATTGGTGTGGAAACATTTGTCCTCAAAGCTGGCCGGGAGTTGAA
AAATTAGAGCTCTTTCAAAAATTAAACTTTTCCAAAGGTGATCAAAAAAGAAAAGTTAAG
GAGAGACTTAGAGCAGTAGTGAAAGATTCAGCTGCTTTAGAATTAATTGATAATTTATTG
TCACTTGATCCAAAGAACAGAATTGATGCAGATAATGCATTGAATCATGATTATTTTTGG
TCTGATCCAATGCCATGTGAGGACTTGAAGGAAAAATTTGAGAAAATTTCGGATTCGCAT
TTTGAGTTTTTGGATGAGGCAAGACGAAAGAGAGAAGAATTTGAGATGAGAAAATTACTT
GAGAGCAAAAAGAAGAATGGTGTTAACTATAATGGCTATTTTGATAGAGTTTATTAGAAA
TTTAAGTTAGAATAATTATTGTATTAAGTGCAATAAGATTTAAAATAATTTCCTCATATT
GTCATTTAACTTAAGATCATACGAAGCCATAAAACTATATAAGACTGAAATCAAAGTGAG
ATCATTTGAGTCAAATTTACTTGAATATAGCTATTTCTGATACAGAGTCAATTATCAAAG
TAAGTTAAGACTCAAATTATTTCAACTTGATTAAATAAATAAATAAATAAGTAAAATATG
TTAAAACATTGAAATTAGCTAGAAAAAATATTTTAAATAGAATTTAATAATTTGAAAATT
TAAAATATTTTAATTTAAATTCATATAAATTATATGACAAAAACTCAAAAAAAAAATCAA
AAAACATTAAACTTGATGAGAAAATCAGCCTTAAAATAATCAAAAACTACCTCAAAAAAA
AAAAAAAAAATTAAAGAACCAAAAAAATTAACAAAAAATAAAAATGTTTCGACCTCTATG
AGTGTTACTTAAGCTTTAAGTTAATATTTTTTATAAAAAAAATTTAAAAGTTAAAAAAAT
TAAGAAAATAAAAAAATTCAATTATCAAAAAGTTATTGATATTTTATATTGTTTGTCTTA
TAAAATTTATCAAAATATGGGTAACATTTAATGAAAAAAATTTAAAAAAGAAACCAAAAG
AAAATAAATAAAAAAAGTTGATAATATTAAAATTTTGAATTTAATATTAATTTGAATTCA
TAATGATTCATTTAAAAAAGCTTTCTTTTATAAGTTTC
>g17533.t2 Gene=g17533 Length=157
MAEMWTRHAIMKGESEVKQLEICENWCGNICPQSWPGVEKLELFQKLNFSKGDQKRKVKE
RLRAVVKDSAALELIDNLLSLDPKNRIDADNALNHDYFWSDPMPCEDLKEKFEKISDSHF
EFLDEARRKREEFEMRKLLESKKKNGVNYNGYFDRVY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g17533.t2 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 114 | 0 |
| 1 | g17533.t2 | PANTHER | PTHR24056:SF414 | CYCLIN-DEPENDENT KINASE 9 | 1 | 135 | 0 |
| 2 | g17533.t2 | PANTHER | PTHR24056 | CELL DIVISION PROTEIN KINASE | 1 | 135 | 0 |
| 3 | g17533.t2 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 105 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
