General information for g17544.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 155.
Parent gene
- The parent gene g17544 is located on chr_4: 13830284..13832805 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17544 | g17544.t1 | TTS | g17544.t1 | 13828751 | 13828751 |
| chr_4 | g17544 | g17544.t1 | isoform | g17544.t1 | 13828800 | 13830284 |
| chr_4 | g17544 | g17544.t1 | exon | g17544.t1.exon1 | 13828800 | 13828967 |
| chr_4 | g17544 | g17544.t1 | cds | g17544.t1.CDS1 | 13828800 | 13828967 |
| chr_4 | g17544 | g17544.t1 | exon | g17544.t1.exon2 | 13829025 | 13829272 |
| chr_4 | g17544 | g17544.t1 | cds | g17544.t1.CDS2 | 13829025 | 13829272 |
| chr_4 | g17544 | g17544.t1 | exon | g17544.t1.exon3 | 13829334 | 13829387 |
| chr_4 | g17544 | g17544.t1 | cds | g17544.t1.CDS3 | 13829334 | 13829387 |
| chr_4 | g17544 | g17544.t1 | exon | g17544.t1.exon4 | 13829442 | 13829707 |
| chr_4 | g17544 | g17544.t1 | cds | g17544.t1.CDS4 | 13829442 | 13829707 |
| chr_4 | g17544 | g17544.t1 | exon | g17544.t1.exon5 | 13829765 | 13830087 |
| chr_4 | g17544 | g17544.t1 | cds | g17544.t1.CDS5 | 13829765 | 13830087 |
| chr_4 | g17544 | g17544.t1 | exon | g17544.t1.exon6 | 13830138 | 13830284 |
| chr_4 | g17544 | g17544.t1 | cds | g17544.t1.CDS6 | 13830138 | 13830284 |
| chr_4 | g17544 | g17544.t1 | TSS | g17544.t1 | NA | NA |
Sequences
>g17544.t1 Gene=g17544 Length=1206
ATGAATGTATTTGAAGAACACGATCCAATGCTTGATGATCACATCAATAAATGTCGCTGT
TGCTTTAGAACTATACTTAGTGATCAAAATTCTGTGAAAATTACTAAAGCAATTGAGCAA
AAATTTTTTGATCTGACTAGTCTTGAACTGATTCAAGCCGATAATTTTTCATCAAAAATC
TGCCAATTATGTGACAAAGATCTCGAAATATTTCAAAATTTCCGAAGAGATCTCATGCAA
AAGCAAAGAAAACTTTACAATTCAGTTGGATATAATCAAAATAATTTACCGATGAAACCA
GAAATCAATGAATTTATTGATTGCAATCCTATTGAAAATGAAAGTATCGAATGTACTGAT
GCCGATGAATTGTTGGAAAATATTTATGAAATTAAAGAAATTGAAACTACGGAGGAGGAA
AAAGCAAACGAAAATCAAGAAGAAGAAAATATTCGGGAGAAAAATGATTTAAAGTTTAAA
ATGATTCAAGATATTTCTGACATAAACCATGAATTGCCAAATAAATTTCTATGTGATAAG
TGCAATTTTGAAGCTACAGAAAAATCAACACTTGAACGTCATTTAAAAATTCATTCAATA
AAAGAATCTCAATTATTTTTCTGTGAAATGTGTGGTTTAAGTTATGGAAAGAGACATTTA
TTAAATAGACATGTCAAAGTTAAGCATACAACTAAAGAAAGAAAATTTAAATGTACAAAT
CAAAATTGTGATAAAGCATTTTATACACTGGCGGGATTGAAAAAGCATTCAGAAACTCAT
TCTGAAAAGGCCTTACCATGTGAATATTGTGGAAAACTTTTCTCATGTCTTAACAATCTT
CGAACTCATTTATATTACCATGCAGAACCTAAATTTTCATGTGATTTTGAAGGATGTGGG
AAAAAATTTTTTATGAGAAAACTTTGGAAATCGCACATGAAAGTTCATAAAGGACAAAAA
GATTTTGATTGTGAATTTTGTGATAAATCTTATTTCTTTCAAGCACATTTGAAACGTCAT
GTAATTTCTATGCATATGAAACTCAAAATTGATTGTGAATTATGCCCAAGTTCATTTGCA
AGAAAGGAGACATATAGAAATCATATTATAAATCAACATCCAAATTTGACTAGTGAAGAG
CAAGAGGTTATATTGGCAAAAATTAGAAATATGAAAGTTGAAGATTATCGAAATACTTCA
AGATGA
>g17544.t1 Gene=g17544 Length=401
MNVFEEHDPMLDDHINKCRCCFRTILSDQNSVKITKAIEQKFFDLTSLELIQADNFSSKI
CQLCDKDLEIFQNFRRDLMQKQRKLYNSVGYNQNNLPMKPEINEFIDCNPIENESIECTD
ADELLENIYEIKEIETTEEEKANENQEEENIREKNDLKFKMIQDISDINHELPNKFLCDK
CNFEATEKSTLERHLKIHSIKESQLFFCEMCGLSYGKRHLLNRHVKVKHTTKERKFKCTN
QNCDKAFYTLAGLKKHSETHSEKALPCEYCGKLFSCLNNLRTHLYYHAEPKFSCDFEGCG
KKFFMRKLWKSHMKVHKGQKDFDCEFCDKSYFFQAHLKRHVISMHMKLKIDCELCPSSFA
RKETYRNHIINQHPNLTSEEQEVILAKIRNMKVEDYRNTSR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g17544.t1 | Coils | Coil | Coil | 129 | 154 | - |
| 14 | g17544.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 173 | 237 | 4.5E-10 |
| 13 | g17544.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 238 | 264 | 4.7E-5 |
| 16 | g17544.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 265 | 313 | 3.3E-8 |
| 15 | g17544.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 314 | 384 | 1.5E-11 |
| 2 | g17544.t1 | PANTHER | PTHR24409:SF375 | SNAIL FAMILY ZINC FINGER 2 TRANSCRIPTION FACTOR HOMOLOG | 25 | 239 | 5.9E-44 |
| 5 | g17544.t1 | PANTHER | PTHR24409 | ZINC FINGER PROTEIN 142 | 25 | 239 | 5.9E-44 |
| 3 | g17544.t1 | PANTHER | PTHR24409:SF375 | SNAIL FAMILY ZINC FINGER 2 TRANSCRIPTION FACTOR HOMOLOG | 145 | 316 | 5.9E-44 |
| 6 | g17544.t1 | PANTHER | PTHR24409 | ZINC FINGER PROTEIN 142 | 145 | 316 | 5.9E-44 |
| 4 | g17544.t1 | PANTHER | PTHR24409:SF375 | SNAIL FAMILY ZINC FINGER 2 TRANSCRIPTION FACTOR HOMOLOG | 239 | 368 | 5.9E-44 |
| 7 | g17544.t1 | PANTHER | PTHR24409 | ZINC FINGER PROTEIN 142 | 239 | 368 | 5.9E-44 |
| 1 | g17544.t1 | Pfam | PF13909 | C2H2-type zinc-finger domain | 178 | 199 | 2.7E-7 |
| 18 | g17544.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 208 | 229 | - |
| 23 | g17544.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 238 | 260 | - |
| 22 | g17544.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 267 | 287 | - |
| 20 | g17544.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 294 | 316 | - |
| 19 | g17544.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 324 | 345 | - |
| 21 | g17544.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 352 | 373 | - |
| 32 | g17544.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 176 | 203 | 9.91 |
| 33 | g17544.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 206 | 234 | 10.263 |
| 36 | g17544.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 236 | 265 | 10.887 |
| 35 | g17544.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 265 | 292 | 10.803 |
| 34 | g17544.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 292 | 321 | 12.009 |
| 31 | g17544.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 322 | 350 | 9.785 |
| 27 | g17544.t1 | SMART | SM00355 | c2h2final6 | 176 | 198 | 0.048 |
| 25 | g17544.t1 | SMART | SM00355 | c2h2final6 | 206 | 229 | 0.1 |
| 30 | g17544.t1 | SMART | SM00355 | c2h2final6 | 236 | 260 | 0.053 |
| 28 | g17544.t1 | SMART | SM00355 | c2h2final6 | 265 | 287 | 0.1 |
| 26 | g17544.t1 | SMART | SM00355 | c2h2final6 | 292 | 316 | 0.0089 |
| 29 | g17544.t1 | SMART | SM00355 | c2h2final6 | 322 | 345 | 0.27 |
| 24 | g17544.t1 | SMART | SM00355 | c2h2final6 | 350 | 373 | 0.45 |
| 8 | g17544.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 17 | 87 | 8.84E-7 |
| 12 | g17544.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 176 | 226 | 2.83E-6 |
| 10 | g17544.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 216 | 274 | 3.52E-8 |
| 11 | g17544.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 274 | 331 | 1.33E-10 |
| 9 | g17544.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 316 | 368 | 2.59E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
