Gene loci information

Transcript annotation

  • This transcript has been annotated as Ferrochelatase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17554 g17554.t8 TSS g17554.t8 13854161 13854161
chr_4 g17554 g17554.t8 isoform g17554.t8 13854639 13855949
chr_4 g17554 g17554.t8 exon g17554.t8.exon1 13854639 13855949
chr_4 g17554 g17554.t8 cds g17554.t8.CDS1 13854691 13855557
chr_4 g17554 g17554.t8 TTS g17554.t8 13855928 13855928

Sequences

>g17554.t8 Gene=g17554 Length=1311
TCTTTTAATCAATCATGAAATATTTATATATATATAAACTTTAGGTGAACTAATGTGCAA
AAAACTCGATCAACTTTCACCTGAAACTGCTCCTCATAAAAGTTATGTTGGTTTTCGTTA
CGTTGATCCATTCACTGAAGATACTATCAAACAAATTGAAGCTGATGGACCAGAGCGTGT
TGTTATTTTCTCTCAATATCCACAATATAGTTGTGCAACATCAGGTTCAAGTTTTAATTC
AATATATACTCATTTCAATGGACAAAAACCTAAGAGTAGTATCAAGTGGAGTATGATTGA
CAGATGGCCAACTCATCAACTTCTTGTTAAAACATTTGCAGAGAGAATTAAGGAAAAACT
TGTTGAATTTGATGAAAATGATAGAAAAGATGTAATTTTACTTTTCTCAGCTCACTCACT
GCCATTAAAATCAGTAAGACGAGGTGATCCATATCCAAATGAAGTAGGAGCAACTGTTAA
CGCTGTAATGGCTGAACTTGATTACTGTAATCCATACAGTCTCGTTTGGCAATCGAAGGT
GGGACCTCTGCCCTGGCTTGAGCCATTCACTGACGATGCCATCAAAATGTATGTCGCTAA
GGGCAAGAAACATTTTATTCTTGTTCCCATAGCTTTTGTAAACGAGCACATTGAGACACT
TCATGAATTGGACATTGAATACTGTAAAGATCTTGCTAAAGAAATCAGAGCAGAGAAAAT
ATTGCGAGCAGCAGCACCTAACGATCATCCAATCTTTATCGATGCAATTAGTGATATTGT
AAACAAGCATTTAAAGAGCGATCAAAGAGTTAATCCGAAATTTTTGACTCGCTGTCCTCA
CTGTGTTAGCGAGAAATGTCACAAGAGCAAGAAATTCTTTAAAGAGTTGTGTGAGGCCAG
TGTGAATCTCTCAATTTGATTTTTTAATCTAAATATTTTTACACTTCTTTGAAAACAATA
CCTCATACAAAAAACGGGTCAAATTTATGTTTCTTTTTCTGTTAGAATTCTAAAAATTCA
TCAGTTTACAAACGCTCTTTAAAGAATTTCTTTTTATTTCAAATCGAATTTGTAAAACAA
ATGACAAATGATCAACTCAACTCATAGCATTCTAGAAATTTCTGTGTTAATTTTTTTCCT
TTAGAAATAGACAATTTAATTGTCCCTTGATTTTTTTTTATATCTGTTCCTTACGCAAGC
AGCTTGCATTTTTTTGTTAGAAAATTTTTATTTTGTTTTATGAACACACACCATGAAAAG
ACCATATAAATAAATTTTTATGAAAAATGTACCCGATTATTTTTTTTTACT

>g17554.t8 Gene=g17554 Length=288
MCKKLDQLSPETAPHKSYVGFRYVDPFTEDTIKQIEADGPERVVIFSQYPQYSCATSGSS
FNSIYTHFNGQKPKSSIKWSMIDRWPTHQLLVKTFAERIKEKLVEFDENDRKDVILLFSA
HSLPLKSVRRGDPYPNEVGATVNAVMAELDYCNPYSLVWQSKVGPLPWLEPFTDDAIKMY
VAKGKKHFILVPIAFVNEHIETLHELDIEYCKDLAKEIRAEKILRAAAPNDHPIFIDAIS
DIVNKHLKSDQRVNPKFLTRCPHCVSEKCHKSKKFFKELCEASVNLSI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g17554.t8 CDD cd00419 Ferrochelatase_C 93 230 3.59159E-53
7 g17554.t8 Gene3D G3DSA:3.40.50.1400 - 1 121 3.7E-40
6 g17554.t8 Gene3D G3DSA:3.40.50.1400 - 122 280 4.3E-25
2 g17554.t8 PANTHER PTHR11108:SF1 FERROCHELATASE, MITOCHONDRIAL 1 277 7.2E-96
3 g17554.t8 PANTHER PTHR11108 FERROCHELATASE 1 277 7.2E-96
1 g17554.t8 Pfam PF00762 Ferrochelatase 3 247 1.4E-75
5 g17554.t8 ProSitePatterns PS00534 Ferrochelatase signature. 116 134 -
4 g17554.t8 SUPERFAMILY SSF53800 Chelatase 1 277 1.03E-82
8 g17554.t8 TIGRFAM TIGR00109 hemH: ferrochelatase 3 247 2.7E-73

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004325 ferrochelatase activity MF
GO:0006783 heme biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values