General information for g17569.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17569 is located on chr_4: 13919608..13921373 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17569 | g17569.t1 | TTS | g17569.t1 | 13919500 | 13919500 |
| chr_4 | g17569 | g17569.t1 | isoform | g17569.t1 | 13919608 | 13921373 |
| chr_4 | g17569 | g17569.t1 | exon | g17569.t1.exon1 | 13919608 | 13920896 |
| chr_4 | g17569 | g17569.t1 | cds | g17569.t1.CDS1 | 13919608 | 13920896 |
| chr_4 | g17569 | g17569.t1 | exon | g17569.t1.exon2 | 13920956 | 13921373 |
| chr_4 | g17569 | g17569.t1 | cds | g17569.t1.CDS2 | 13920956 | 13921373 |
| chr_4 | g17569 | g17569.t1 | TSS | g17569.t1 | 13921574 | 13921574 |
Sequences
>g17569.t1 Gene=g17569 Length=1707
ATGGAAGCATTTTGTGCATATGATGAAATAAATTTTCCATCACTATATGTAGCAAAATTT
GAAGGTCATCACTTTAATCTAGATCAATTCAAAGAGGACTTTCAAGTAAATCATCTTCTT
GAAGAATTTAAAAATGAACAAGTCGAAGGATTATTTTTTCAAAACTGCATGATACAAGGA
CTCTCAGGACTTCCAGAATTGTTCCCAAATATACGCCATATTGTTTTCAAAGACTCATCA
TTAGAAAATATTGAATGGAAGAATTTAGAAATTTTCAACAAAATTGAAATTTTTAAAGTT
GAAAATTGTGTCATTGAGCTATTTATGGGTACTATTTTTGAATGGTGTTCTAGCATGATT
TTCAGAATTGAAGGAAGACAAGAAAATGTAAATTTAGAGACTGAAATGACTATCATAGTG
CCTAACAGAAAAGTTAATCCTGTTGAACCAGCAAAAATTGCTCAAATTCAAATTCCTGTC
ATTCCAACAATGCAACAAAAAGATGATGCTGCATCTTTTCAATTGCTTCAATTTGATCCA
CTAAACTTTACAAAAGTTCAACAAATAAATGTGCCTGAATTTATCCATGTTGACAAAAGA
GAAACTCTTCAAAATGTCCCTGAACCATCAAATGATTTAGTCAAAAAAGATGGTGAAGAC
GATCTTTTTGTAGAAGATTACATAAAGCTTGGCGCTATTAAAAAAATTAATAAAATCGAG
CCAAAAAAACTTGAAGATTTTAATTTTAAAATGTCTGGACCAACAAGTTTAACATTAGGA
CCAGGAAATTTAAATTTTCTTTTTCCTCAACGATTTGAACATCAAAATCAAAATGAAAAC
CTAACTCTATCACCTTCAACCTTATCAGATTCATCTACAGCAAGTGAGAAAAATATGAGT
AACTCTTTGAAATCGATGAAAGATTCAGATAATGATAAGGCTTGGCAATTGCGTTGCAGT
AAGCTTGAAAGCCATATAATAACTCTCTCAAATCAACTGGAAACAAATCAGTTGGAAATA
GTGAAACTCAATTTGATGTTGGATGATTTGAAAAAAGTTTTTGCTGATGATGATTTCAAA
GATTTTACATTTAAAATTAAGGATTCTTCATTTCTTGTACACAAAGTTCTTTTTGCTGCA
AAAAGTTCTGTTTTCGCAAAAATGATCAAAAACAATCCATATGCAGAAGAAATGAATTTG
GTTGACATTCCTGTTGCAACATTTCAAATAATTCTTGACTTTATTTACAACAATCGACTG
CCAGATAATAATGACAATCTTATTGAAATTTTTGCTGCATCTGGACGCTTAAATATTTCA
GAATTAATGAATACAACAGCAAAGAAATTGATGGACATAATTGATGAAAGAAATGCTCTC
GAAACACTAATGCTTGCTCATAAATACGGAAATGATGAGCTACGACAGAAGGCGTTCAAG
TGCATTCAAGAAAAAATTTTTCCAGATCGAAAGCTTGCTGAGGAATTTTTAAGACAACCT
GAGAAAATCAAAAAACTGATTGAGATGAAAAAGCGTCTTGATGAAGAATATGAAAAAATG
AGACTAGAGCTTGAAGATTTTGAAATTGGTGAAAAAGAAGTTAAAGAAGAACTTTGTGAA
GAGAAATCAGTTGAAAATATTTCACCTTCAACTATATCAAATAGTGAAGATGGTTTTTGT
GTCATTACAGATGGAGCATCTTATTAA
>g17569.t1 Gene=g17569 Length=568
MEAFCAYDEINFPSLYVAKFEGHHFNLDQFKEDFQVNHLLEEFKNEQVEGLFFQNCMIQG
LSGLPELFPNIRHIVFKDSSLENIEWKNLEIFNKIEIFKVENCVIELFMGTIFEWCSSMI
FRIEGRQENVNLETEMTIIVPNRKVNPVEPAKIAQIQIPVIPTMQQKDDAASFQLLQFDP
LNFTKVQQINVPEFIHVDKRETLQNVPEPSNDLVKKDGEDDLFVEDYIKLGAIKKINKIE
PKKLEDFNFKMSGPTSLTLGPGNLNFLFPQRFEHQNQNENLTLSPSTLSDSSTASEKNMS
NSLKSMKDSDNDKAWQLRCSKLESHIITLSNQLETNQLEIVKLNLMLDDLKKVFADDDFK
DFTFKIKDSSFLVHKVLFAAKSSVFAKMIKNNPYAEEMNLVDIPVATFQIILDFIYNNRL
PDNNDNLIEIFAASGRLNISELMNTTAKKLMDIIDERNALETLMLAHKYGNDELRQKAFK
CIQEKIFPDRKLAEEFLRQPEKIKKLIEMKKRLDEEYEKMRLELEDFEIGEKEVKEELCE
EKSVENISPSTISNSEDGFCVITDGASY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g17569.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 361 | 437 | 3.0118E-16 |
| 7 | g17569.t1 | CDD | cd14733 | BACK | 455 | 508 | 0.00260958 |
| 6 | g17569.t1 | Coils | Coil | Coil | 503 | 537 | - |
| 5 | g17569.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 326 | 485 | 3.4E-29 |
| 10 | g17569.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 305 | - |
| 11 | g17569.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 307 | - |
| 2 | g17569.t1 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 261 | 511 | 3.0E-18 |
| 3 | g17569.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 261 | 511 | 3.0E-18 |
| 1 | g17569.t1 | Pfam | PF00651 | BTB/POZ domain | 351 | 450 | 5.3E-15 |
| 12 | g17569.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 360 | 424 | 14.501 |
| 9 | g17569.t1 | SMART | SM00225 | BTB_4 | 360 | 454 | 5.4E-13 |
| 4 | g17569.t1 | SUPERFAMILY | SSF54695 | POZ domain | 345 | 453 | 1.88E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
