General information for g17573.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17573 is located on chr_4: 13958900..13972173 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17573 | g17573.t15 | TSS | g17573.t15 | 13958237 | 13958237 |
| chr_4 | g17573 | g17573.t15 | isoform | g17573.t15 | 13958900 | 13959981 |
| chr_4 | g17573 | g17573.t15 | exon | g17573.t15.exon1 | 13958900 | 13959099 |
| chr_4 | g17573 | g17573.t15 | exon | g17573.t15.exon2 | 13959182 | 13959255 |
| chr_4 | g17573 | g17573.t15 | exon | g17573.t15.exon3 | 13959313 | 13959981 |
| chr_4 | g17573 | g17573.t15 | cds | g17573.t15.CDS1 | 13959417 | 13959758 |
| chr_4 | g17573 | g17573.t15 | TTS | g17573.t15 | 13959980 | 13959980 |
Sequences
>g17573.t15 Gene=g17573 Length=943
CGTAACAATTTTCTTTCGTGGACCAATCGAAGTTATTATTTTAATTCATAATTTTCTTTT
AAGTAACTTATTAAAAATTTTCAATCTTTTATTCTGAAATATATTTAATTTAATTTTAAT
AGGAATGAGAATCCCGTATATGAAAATTTTAGTTTATATTCTCACTTTCGCGGGATATTG
TTATTCCGGTTATGGAAGTGTAAAAAATTTCAATCAGTTCATGAGATTTTTGATACAGCT
GTAGAAGAAAATTGTGTTTTTAAATGTCCTGGAAATCCCGACATAAGGCCTAAACCAAAT
AAACTTCATGTACCATCAAGTGATTCTTGTGGTTCACTTGGATTGAAAATTAATACCGAT
TATTTACCAGCACCAGAGATGGCAAAATGCTGTGATGCTCATGACATTTGCTATGAGACA
TGTATTAGTGGCAAAGAATTATGTGATCTTGATTTTAAAAGATGCTTATATAAGTACTGT
GACAGCTTTGAAAAAAGCGCTGCTGGTGAACTGCTGATTAAAGGATGTAAAGCAGCAGCC
AAAACATTATTTACTGGTACAATGGTACTTGGCTGTAAAAGTTATCTTGATGCACAAGCA
AGAGCATGCTATTGTCCAGTGAATCAGAATCAAAATGAACAAAATCAAAGAAAATATGAT
AAATATGAATACAAACAAAAACAAAAAGATAAAAAATTTAAATGGCAAAGTGATTTATGA
ATTGATTACAAGAATTTTATATGCGTAATTTTCTTACTGGATCGTAAAGTCAAATAAATA
AAACTTCCTCATTCATGCCTTTATATCAACCTTTTTGCGATATCAACATAAACAAATCCA
TTAAGTATTTATAAAATACCATGACGAACTCATTTTTAAAAAAATTGTTTTAAATGATTT
CCTTTGATGAGGCCTAAAATAAAGAATTTACTAAAAAATAAAA
>g17573.t15 Gene=g17573 Length=113
MAKCCDAHDICYETCISGKELCDLDFKRCLYKYCDSFEKSAAGELLIKGCKAAAKTLFTG
TMVLGCKSYLDAQARACYCPVNQNQNEQNQRKYDKYEYKQKQKDKKFKWQSDL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g17573.t15 | PANTHER | PTHR12824:SF8 | GXIVSPLA2, ISOFORM A | 1 | 93 | 0 |
| 3 | g17573.t15 | PANTHER | PTHR12824 | GROUP XII SECRETORY PHOSPHOLIPASE A2 FAMILY MEMBER | 1 | 93 | 0 |
| 1 | g17573.t15 | Pfam | PF06951 | Group XII secretory phospholipase A2 precursor (PLA2G12) | 1 | 84 | 0 |
| 4 | g17573.t15 | SUPERFAMILY | SSF48619 | Phospholipase A2, PLA2 | 1 | 65 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0050482 | arachidonic acid secretion | BP |
| GO:0016042 | lipid catabolic process | BP |
| GO:0006644 | phospholipid metabolic process | BP |
| GO:0005509 | calcium ion binding | MF |
| GO:0005576 | extracellular region | CC |
| GO:0004623 | phospholipase A2 activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
