Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17578 g17578.t2 isoform g17578.t2 13996383 14001634
chr_4 g17578 g17578.t2 exon g17578.t2.exon1 13996383 13996911
chr_4 g17578 g17578.t2 cds g17578.t2.CDS1 13996852 13996911
chr_4 g17578 g17578.t2 exon g17578.t2.exon2 14000426 14000834
chr_4 g17578 g17578.t2 cds g17578.t2.CDS2 14000426 14000834
chr_4 g17578 g17578.t2 exon g17578.t2.exon3 14000896 14001634
chr_4 g17578 g17578.t2 cds g17578.t2.CDS3 14000896 14000921
chr_4 g17578 g17578.t2 TSS g17578.t2 NA NA
chr_4 g17578 g17578.t2 TTS g17578.t2 NA NA

Sequences

>g17578.t2 Gene=g17578 Length=1677
ATGGAATCGATAGAAGAAATAATTGAACAAGAGATTGTGGAACCGTTGGTAGAAGAAACA
CATCATGCACATCATATACAATCACATCGCAATCATCGACATCATAACAATGGTTCAATT
GTTATTACAACACAAGCAGGACAAATTTTGCATCGCACTGGACATGAATTAAATAATAAT
GGTGAGAAGATTTTTATAAAAATAATTTATATAAATAGATAATAATATTTTTTCAAATTT
TAAAGAGCAATTAGATCATCAACGTGGTCGAATCATTACACATGCAAGCCAGGTTGTACC
TGGATTAGAAATGATAAAACAAGAACATCCTTGTTCTGATTTAGGTGGGCAAGCTTTTAT
TTTAAAAAATTTTTTGTTTTGAAAAATTAAATGTTTTGTAGATACTCAACTTGACCATCA
TTCAGTACAACACCATCATCAAAAACAAGAAACTTTATCGGTAATTGTACAACCACACGA
TGATTCACGTGATTCAACACAACAAATTTTAAGTCCCGACTCTGGACCATGCACTGAAAT
TATTGATGCATCAGATTTCCGTTCAATGAATGAGCCAACTTATCAAACTTTGACATCAGT
TAATGGGAGAATGTCACCACCTGGATTTAGTCCAAATTCTAGTTATGCTACTTTAACACC
TCTTACGCCTCTTCCTCCAATTTCAACAATGTCAGATAAATTTGCATACGGACATGCTCA
CGGTGATATCACTCGTGTCATATACGTATGACGATAAGTCACCATCAATGGACATATCAC
CACCTCACAGCTACTCGCCTATTCCTCAATCCATCTACAGCCAAAATGGCCTTCCATCAC
CACCTCAAAAGAGCATGTCACCTGTTTATGAATCACCATATAGTAATCATCGAGATTTGC
TTGGATCTTCTACTGCACCAACATCATCACGACAACAAAATGGTAATGGAGTTATAAGCG
ATCATCAAACATCACCAACTTCACCACCGCATAGCTTTTCACCACAATCCATGTATAATG
GGATTCGTCAAAATGGTAATAGTCAACAACAGCAACAACAAAACATTTCAATTACAACAT
CAGCACCAAGTCCAACTTTAAGTGCACAATCAGCTGAATTGCATTCACCAGTTGAGCAAA
TTGATAAATTTTCCTTTTTACTTGTTTGTTTCCATACATACATATATAAACATCTCTTAC
ACACTTAGTATTCCTTTATAGAGTGTGAAAGAAATGAAAACACGTGCGTGGATGAGAGTC
ATAAAAATAAAGAAGGAATGTATTTTATGTATTTTAATGGAAATGAGAAGAAACAAGGTG
TCGAATGTTGTCACATATAAAAGAGATCAAGTTTTTGCAAATAAAAGTTTTTTTTTGAGC
ATATTTGAAAAATAAAAAATGCTTAACACATTAAAGCAGTCTTTTAGAGAAAGAAAAATG
TAGAAATCTGAATCCAGATAAAAAGTTGTAAATTGTAATAAATAAATGAAAATAATGATG
AAACAGTAAAAAGGTGAAGCATAAATTTAGAAAAAACTTTTTTTTCAGTTAATAATTCTA
TAGTTAACTTCTAGTGAAATCAGAAAAAGATGTCATTGTTTCTTTAATTTATCTTCGTTA
GAAACTGGCTTTTACAAAAATTGTTGAAATAATCTTTATGAGAACTACAGAACAAAA

>g17578.t2 Gene=g17578 Length=164
MLTVISLVSYTYDDKSPSMDISPPHSYSPIPQSIYSQNGLPSPPQKSMSPVYESPYSNHR
DLLGSSTAPTSSRQQNGNGVISDHQTSPTSPPHSFSPQSMYNGIRQNGNSQQQQQQNISI
TTSAPSPTLSAQSAELHSPVEQIDKFSFLLVCFHTYIYKHLLHT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g17578.t2 MobiDBLite mobidb-lite consensus disorder prediction 19 133 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed