General information for g17608.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Scoloptoxin SSD14.
Parent gene
- The parent gene g17608 is located on HiC_scaffold_16: 8855..9695 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_16 | g17608 | g17608.t1 | isoform | g17608.t1 | 8855 | 9695 |
| HiC_scaffold_16 | g17608 | g17608.t1 | exon | g17608.t1.exon1 | 8855 | 9530 |
| HiC_scaffold_16 | g17608 | g17608.t1 | cds | g17608.t1.CDS1 | 8855 | 9530 |
| HiC_scaffold_16 | g17608 | g17608.t1 | exon | g17608.t1.exon2 | 9589 | 9695 |
| HiC_scaffold_16 | g17608 | g17608.t1 | cds | g17608.t1.CDS2 | 9589 | 9695 |
| HiC_scaffold_16 | g17608 | g17608.t1 | TSS | g17608.t1 | NA | NA |
| HiC_scaffold_16 | g17608 | g17608.t1 | TTS | g17608.t1 | NA | NA |
Sequences
>g17608.t1 Gene=g17608 Length=783
ATGAAGACTCCACTACCGAAGAAGTTTATTATAACAGTAATTTTGCTGTTATGTTCAACA
ATTTTCAGAACAATTGACGCTTCCGCTTTTCCTTCTAATATTTTTACGTTTTATAAGGCA
GCAATTGTCACAAATGGCCTCGAATGTGCATCATTAGGCAAAAAAATATTTGATATGGGT
GGAAATGTTGCTGATGTTGCTGTGACTGTTGTTTTATGTGAAGGCGTGGCAAATCCACAA
AGTTCAGGAATTGGTGGTGGCTTTTTGCTCAGTTATTATTCGAAAACTGAAGGAATTGTG
AGAACTTTGAATGCTCGTGAAACTGCACCTGCTGCTGCAACGATTGATATGTTTGTTAAT
GACACAAATTCAGCAGTTTCTGGTGGAAAAGCAGTTGCTGTACCTGGTGAAATTAAAGGA
CTTTGGGAATTGCATCAAAAATTTGGAAGATTAGAATGGAAAACTTTGCTGCAACCTGTG
ATTAAATTATGTAAAGAAGGTCATGTTGTGTCAAATTATCTGCAAAATGTTTTTGGTCGT
TATGAAGAAAGAATTTTCAATGAACCAAGTTTGCGAGAAATTTTTATTAATCCTTCGACC
AATCATACTTATAAATTAGGAGAAAAAGTTAAAAGGTTGAAACTGGCGGAGACACTCGAA
ATTATTGCTAGAGATGGAGTAGATGCAATTTATGGAGGTGGTGAAATCGGAAAAAAATTA
ATTGAAGATGTTCAAAGTTATGGTGGAATTATAACAGAAGAAGATTTGATGAATTATAAG
TAA
>g17608.t1 Gene=g17608 Length=260
MKTPLPKKFIITVILLLCSTIFRTIDASAFPSNIFTFYKAAIVTNGLECASLGKKIFDMG
GNVADVAVTVVLCEGVANPQSSGIGGGFLLSYYSKTEGIVRTLNARETAPAAATIDMFVN
DTNSAVSGGKAVAVPGEIKGLWELHQKFGRLEWKTLLQPVIKLCKEGHVVSNYLQNVFGR
YEERIFNEPSLREIFINPSTNHTYKLGEKVKRLKLAETLEIIARDGVDAIYGGGEIGKKL
IEDVQSYGGIITEEDLMNYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g17608.t1 | PANTHER | PTHR11686 | GAMMA GLUTAMYL TRANSPEPTIDASE | 12 | 260 | 1.0E-95 |
| 3 | g17608.t1 | PANTHER | PTHR11686:SF51 | GAMMA-GLUTAMYL TRANSPEPTIDASE, ISOFORM A | 12 | 260 | 1.0E-95 |
| 7 | g17608.t1 | PRINTS | PR01210 | Gamma-glutamyltranspeptidase signature | 62 | 87 | 1.8E-30 |
| 5 | g17608.t1 | PRINTS | PR01210 | Gamma-glutamyltranspeptidase signature | 131 | 149 | 1.8E-30 |
| 6 | g17608.t1 | PRINTS | PR01210 | Gamma-glutamyltranspeptidase signature | 149 | 168 | 1.8E-30 |
| 4 | g17608.t1 | PRINTS | PR01210 | Gamma-glutamyltranspeptidase signature | 250 | 260 | 1.8E-30 |
| 1 | g17608.t1 | Pfam | PF01019 | Gamma-glutamyltranspeptidase | 55 | 260 | 1.1E-70 |
| 12 | g17608.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 27 | - |
| 13 | g17608.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 9 | - |
| 14 | g17608.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 10 | 22 | - |
| 15 | g17608.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 23 | 27 | - |
| 11 | g17608.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 28 | 260 | - |
| 8 | g17608.t1 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 33 | 260 | 5.02E-66 |
| 10 | g17608.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 27 | - |
| 16 | g17608.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 29 | - |
| 9 | g17608.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006751 | glutathione catabolic process | BP |
| GO:0036374 | glutathione hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed