Gene loci information

Transcript annotation

  • This transcript has been annotated as Glycerol kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1762 g1762.t1 TTS g1762.t1 12891197 12891197
chr_3 g1762 g1762.t1 isoform g1762.t1 12891711 12894827
chr_3 g1762 g1762.t1 exon g1762.t1.exon1 12891711 12891746
chr_3 g1762 g1762.t1 cds g1762.t1.CDS1 12891711 12891746
chr_3 g1762 g1762.t1 exon g1762.t1.exon2 12892282 12892345
chr_3 g1762 g1762.t1 cds g1762.t1.CDS2 12892282 12892345
chr_3 g1762 g1762.t1 exon g1762.t1.exon3 12892425 12892496
chr_3 g1762 g1762.t1 cds g1762.t1.CDS3 12892425 12892496
chr_3 g1762 g1762.t1 exon g1762.t1.exon4 12892659 12892971
chr_3 g1762 g1762.t1 cds g1762.t1.CDS4 12892659 12892971
chr_3 g1762 g1762.t1 exon g1762.t1.exon5 12893027 12893997
chr_3 g1762 g1762.t1 cds g1762.t1.CDS5 12893027 12893997
chr_3 g1762 g1762.t1 exon g1762.t1.exon6 12894120 12894355
chr_3 g1762 g1762.t1 cds g1762.t1.CDS6 12894120 12894355
chr_3 g1762 g1762.t1 exon g1762.t1.exon7 12894569 12894685
chr_3 g1762 g1762.t1 cds g1762.t1.CDS7 12894569 12894685
chr_3 g1762 g1762.t1 exon g1762.t1.exon8 12894759 12894827
chr_3 g1762 g1762.t1 cds g1762.t1.CDS8 12894759 12894827
chr_3 g1762 g1762.t1 TSS g1762.t1 NA NA

Sequences

>g1762.t1 Gene=g1762 Length=1878
ATGACAGCTAAAAAGTTTGGAAAATTAATTGGAGTTATTGAAGTTTCTATATCCCAGTGC
AAGTTTCTGATTTATGCTTTAAAAAATAGTGAGATTCTTACAGAACATGAGATTAAAATT
AATAAAGTCGATAATAGTGATGAAGAAGAATATGATCCGGTTGAATTATGGAATGCTGTT
CAAGAAGTAATTGATGTCGTCATTGGAAATCTTAAAATTCTTGAAATAGATACAAACGAT
ATTTGTGCTATAGGAATAACAAATCAACGTGAAACTTCTTTATTGTGGGATAAGAAAGGC
GAAGTATTTAATTTTTTATGTTGGGCCGATCAACGATTGATTCCACTAAAAAATTCAATA
TTACGAAGTACACGAAACAAACAAAATTATTTGCGAAATATTTGCGGACTACCTTTTGAT
ATTTGCTTTAGCGCAATCAAGATAAAATGGTTGATTGAAAATAATAAGGCAGTGCGAGAT
TCAATAAGAAAGAAAGAGTGCTTTTTTGGTAATTTAGATTCATGGATTATATGGAATTTA
ACGGGCAAAAAAGAACATGTAACAGATGTGTCAAATGCTTCACGTACACTGCTTATGAAT
CTCGAAACATTAAATTGGGATTCAAAATTATGCAATTTTTTCAACGTTCCCATAAGCATA
CTGCCAAAAATTAAAAGTAATTCAGAAATATTTGGATACATTAAGAATAGTACTATTTTA
GAAGGAATTCCAATTGCTAGTTCATTATCAACTCAATCTTCAGCAATGATAGGTCAAATG
TGTTTGAATGCTGGTCAAATAGAATGTCACATCGATAATGACTGTTCAGTAATGCTCAAC
ACAGGAGAAGAGATTATTCATTCAGAAAATGGCTTGCTTACTACTGTTGGTTTTCAATTA
GGTCCTAAAATATGTTACGCCCTTGAAGGATTCATTGGTAATTCTTGTAGCTCATTCGAT
TGGCTTAAAAATACAATACTTCCATCCGAATCAAACAACAATTTTAGTGATGATAATATT
TCACCAGTATCGAGTTTTATTGGAATGAGAAATGAAAACTGCTTCAAAAAAGTGCGCGAA
GAGGAAGTGGTGTTTGTATCAGCGAATAAAGGACTCTGTGCACCAAATTTTCTTTTTCAA
GCAAAAGGTTTTCTTTCGGGAATTTCAATCAATACGACTACTCAGCAAATTTTTACAGCC
GCAAAAGAATCTATATGTTTTCAAACAAAATCGATTCTCGATTCAATTAGAAAAGACTGC
AAAACATGGCCTAGTTTCAATAAACTTGTTGTTGGTGGCGAATTTTCAGAAAATGTTGAT
TTTCTTCAACTTCTTGCTGATTTATGTTGGATTCCGATCGAGCGACCTCAAATTTCTGCA
CCTGTTCCACTTGGCGCAATGCTTTCAGCGGCAATAACAATGAAGTGCATTTCTTTAGAA
GACTTTAAGACGACATCGACATGTGTTCCTCCTATTGATAGCTTCAATCCTACAATAAAT
TCAGATATGAGTGATGAACGATATGTTAAATGGCTGTCAGCATTCAAGACAAGTTTATGT
GTTAATGAAGAAAAGAAAAGAGTGGATGAAGTTAATACGCTTTTAGAAACAAAAACTGCA
CAACAATTTATTATGAATTCTTTACCTGGCTGTCTCTATTTATTTACATCTTATGTTATT
TATGTGTTGAGTCAAGAATTGATGAACAATATATATGGCAAGAAAAATGAACAATCGTTC
TCACTCTTTGTTAGTCTCTCGTCTAGTGCAGTTGAAAGGTCTAACAATGAAGCAATCATG
GAAAATCTTAAAAATTCCAAAGAAAAAGCCATACTAAGACTTCTTTCAACCTTTCTTTGG
AAAAAAACGAATTATTGA

>g1762.t1 Gene=g1762 Length=625
MTAKKFGKLIGVIEVSISQCKFLIYALKNSEILTEHEIKINKVDNSDEEEYDPVELWNAV
QEVIDVVIGNLKILEIDTNDICAIGITNQRETSLLWDKKGEVFNFLCWADQRLIPLKNSI
LRSTRNKQNYLRNICGLPFDICFSAIKIKWLIENNKAVRDSIRKKECFFGNLDSWIIWNL
TGKKEHVTDVSNASRTLLMNLETLNWDSKLCNFFNVPISILPKIKSNSEIFGYIKNSTIL
EGIPIASSLSTQSSAMIGQMCLNAGQIECHIDNDCSVMLNTGEEIIHSENGLLTTVGFQL
GPKICYALEGFIGNSCSSFDWLKNTILPSESNNNFSDDNISPVSSFIGMRNENCFKKVRE
EEVVFVSANKGLCAPNFLFQAKGFLSGISINTTTQQIFTAAKESICFQTKSILDSIRKDC
KTWPSFNKLVVGGEFSENVDFLQLLADLCWIPIERPQISAPVPLGAMLSAAITMKCISLE
DFKTTSTCVPPIDSFNPTINSDMSDERYVKWLSAFKTSLCVNEEKKRVDEVNTLLETKTA
QQFIMNSLPGCLYLFTSYVIYVLSQELMNNIYGKKNEQSFSLFVSLSSSAVERSNNEAIM
ENLKNSKEKAILRLLSTFLWKKTNY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g1762.t1 Gene3D G3DSA:3.30.420.40 - 3 259 1.1E-72
7 g1762.t1 Gene3D G3DSA:3.30.420.40 - 260 520 2.0E-44
3 g1762.t1 PANTHER PTHR10196 SUGAR KINASE 8 519 7.6E-132
4 g1762.t1 PANTHER PTHR10196:SF69 ZGC:172295 8 519 7.6E-132
2 g1762.t1 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 17 258 1.2E-46
1 g1762.t1 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 276 473 2.2E-23
10 g1762.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 542 -
11 g1762.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 543 564 -
9 g1762.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 565 625 -
6 g1762.t1 SUPERFAMILY SSF53067 Actin-like ATPase domain 18 261 2.33E-54
5 g1762.t1 SUPERFAMILY SSF53067 Actin-like ATPase domain 260 516 3.67E-31

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values