General information for g17643.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g17643 is located on HiC_scaffold_25: 7200..8879 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_25 | g17643 | g17643.t1 | isoform | g17643.t1 | 7200 | 8879 |
| HiC_scaffold_25 | g17643 | g17643.t1 | exon | g17643.t1.exon1 | 7200 | 7652 |
| HiC_scaffold_25 | g17643 | g17643.t1 | cds | g17643.t1.CDS1 | 7200 | 7652 |
| HiC_scaffold_25 | g17643 | g17643.t1 | exon | g17643.t1.exon2 | 7715 | 7864 |
| HiC_scaffold_25 | g17643 | g17643.t1 | cds | g17643.t1.CDS2 | 7715 | 7864 |
| HiC_scaffold_25 | g17643 | g17643.t1 | exon | g17643.t1.exon3 | 7936 | 8056 |
| HiC_scaffold_25 | g17643 | g17643.t1 | cds | g17643.t1.CDS3 | 7936 | 8056 |
| HiC_scaffold_25 | g17643 | g17643.t1 | exon | g17643.t1.exon4 | 8138 | 8187 |
| HiC_scaffold_25 | g17643 | g17643.t1 | cds | g17643.t1.CDS4 | 8138 | 8187 |
| HiC_scaffold_25 | g17643 | g17643.t1 | exon | g17643.t1.exon5 | 8510 | 8605 |
| HiC_scaffold_25 | g17643 | g17643.t1 | cds | g17643.t1.CDS5 | 8510 | 8605 |
| HiC_scaffold_25 | g17643 | g17643.t1 | exon | g17643.t1.exon6 | 8661 | 8879 |
| HiC_scaffold_25 | g17643 | g17643.t1 | cds | g17643.t1.CDS6 | 8661 | 8879 |
| HiC_scaffold_25 | g17643 | g17643.t1 | TSS | g17643.t1 | NA | NA |
| HiC_scaffold_25 | g17643 | g17643.t1 | TTS | g17643.t1 | NA | NA |
Sequences
>g17643.t1 Gene=g17643 Length=1089
ATGGAAAATTCAAGCAAACTTTCGATCCCAGATTTTTACAATGGCAAAAGTGTTTTACTC
ACAGGAGGTTTTGGATTTTTAGGAAAAGTGATTATTGAGAAACTTCTTCGATCTTGTCCT
GGAATTGAAAATATTTTTCTACTTGCGAGATCAAAGAAAGGCAAAAATGTTCAAGAGAGA
CTTGATGAGATCATAAATACACCACCATTTGCTAATTTGAAAGAAAAGTCTCCAGAAGTT
TTTAAAAAAATAGTCTTGATTGAAGGCGATGTTGCTGAAGAAAATTTGGGAATTTCTGAA
ACTGATCAAAAGTTGATTTGTGACAAAGTTTCAATTTTTATTCACAATGCTGCGACGATA
AATTTCAATGAACCTCTAAAAACTGCAGTCGATACAAATTTAAGATCAGTTAGAGAAATG
ATAAACTTGGCAAAAAAAGCAAAAAACTTGGATGCATTAGTTCATGTATCGTCAGCTTTT
ACAAATTGGTTTGAATCAGATAACGATAAAATTTTAGTTGAAGAAAAAATTTATCCTAAT
CCATACAATCCAGATGATATAATTAAAATTACACAATTAATGCCGGATGATGTTTTGAAT
AAGATCACACCATCATTATTAGGAAAACATACAAACACTTACAGTTTTACGAAAAATTTA
GCAGAGCATTTAATTGTAAATGAAGGAAAAGATATGCCGATTGCCATTATTAGGCCATCA
ATGGTTATAGGAAGTGCAAAAGAACCAATGCCAGGATGGCTTGATAGTTGGGTGGGTCCA
ACAACTTATGCATATTTAATTGCAAGAGGACTTTTAAGATCATGGCATGTTCATAAAAAT
AATGTTGGTGAAGTTATTCCTGTTGACATGACTGTAAATTTAATTATTGCATCAGCATGG
AAAGTTGGAATTGAGAAAAATCTTATAGAACCACAAATTTATCACAGTGTGACGGGAGCA
AACCCAATAACATGGGAAAAGATGTTTAAACAATATTTAGCAAATGCTAAAAAATATCCA
CTTGGTAAGAATTATTTGAAGGGTTTGAAACCATTTTACAAATTTCAAAACAGATTAAAT
TCTAAATGA
>g17643.t1 Gene=g17643 Length=362
MENSSKLSIPDFYNGKSVLLTGGFGFLGKVIIEKLLRSCPGIENIFLLARSKKGKNVQER
LDEIINTPPFANLKEKSPEVFKKIVLIEGDVAEENLGISETDQKLICDKVSIFIHNAATI
NFNEPLKTAVDTNLRSVREMINLAKKAKNLDALVHVSSAFTNWFESDNDKILVEEKIYPN
PYNPDDIIKITQLMPDDVLNKITPSLLGKHTNTYSFTKNLAEHLIVNEGKDMPIAIIRPS
MVIGSAKEPMPGWLDSWVGPTTYAYLIARGLLRSWHVHKNNVGEVIPVDMTVNLIIASAW
KVGIEKNLIEPQIYHSVTGANPITWEKMFKQYLANAKKYPLGKNYLKGLKPFYKFQNRLN
SK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g17643.t1 | CDD | cd05236 | FAR-N_SDR_e | 16 | 340 | 0 |
| 5 | g17643.t1 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 361 | 0 |
| 2 | g17643.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 8 | 345 | 0 |
| 3 | g17643.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 8 | 345 | 0 |
| 1 | g17643.t1 | Pfam | PF07993 | Male sterility protein | 20 | 295 | 0 |
| 4 | g17643.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 9 | 301 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed