General information for g1765.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glucosidase 2 subunit beta.
Parent gene
- The parent gene g1765 is located on chr_3: 12900450..12901367 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1765 | g1765.t13 | TTS | g1765.t13 | 12900333 | 12900333 |
| chr_3 | g1765 | g1765.t13 | isoform | g1765.t13 | 12900450 | 12901367 |
| chr_3 | g1765 | g1765.t13 | exon | g1765.t13.exon1 | 12900450 | 12901027 |
| chr_3 | g1765 | g1765.t13 | cds | g1765.t13.CDS1 | 12900450 | 12901007 |
| chr_3 | g1765 | g1765.t13 | exon | g1765.t13.exon2 | 12901352 | 12901367 |
| chr_3 | g1765 | g1765.t13 | TSS | g1765.t13 | 12901486 | 12901486 |
Sequences
>g1765.t13 Gene=g1765 Length=594
ACTGTAAAAATTGAATATTTTTTTCCTACCTACACTATGAGGAAAGTTTGGATAAAGCAA
GCTGATTTGATTCCAAAACCATTTTATAAGCGGAAGCTCTTCATTTTCTTCATACTTGTT
TTCGTTTTTTCTGTAATTTTTATAATTTATCAATTTAAGTTTATTAATCAGTTATCAGAC
ACTAATCGAGACCTTCTTATAACTGAACGTCATCGGAGAGAAGAAATGATAACACAAGCG
AAAAATAAATTATTAGATATTTCACCACAACAGGCTCCAAGTAGTACAAGAGAGATAATT
TTAGGAATAAGAATTAGAGATCTCGATAATTATCAACAAAAATATCCAAATCAATTATTT
CGATGCCTGGATGGAAGTAAAGAAATTCCTTTTGCGAAAGTTAATGATGATTATTGTGAC
TGCCAGTCAGATGGAAGTGATGAGACTTTTACTAATGCGTGTAGTAATGGAAAATTTTAT
TGCAAAAAACAAATGAGACATAAAACAGGAAGAGGCAGTGATGTATGGGTACCAACTAGT
AGAATCAATGATAAAATTTGTGACTGTACTGATTGTTCTGACGAGTTTTTGTAA
>g1765.t13 Gene=g1765 Length=185
MRKVWIKQADLIPKPFYKRKLFIFFILVFVFSVIFIIYQFKFINQLSDTNRDLLITERHR
REEMITQAKNKLLDISPQQAPSSTREIILGIRIRDLDNYQQKYPNQLFRCLDGSKEIPFA
KVNDDYCDCQSDGSDETFTNACSNGKFYCKKQMRHKTGRGSDVWVPTSRINDKICDCTDC
SDEFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1765.t13 | PANTHER | PTHR12630:SF1 | GLUCOSIDASE 2 SUBUNIT BETA | 32 | 184 | 1.3E-31 |
| 3 | g1765.t13 | PANTHER | PTHR12630 | N-LINKED OLIGOSACCHARIDE PROCESSING | 32 | 184 | 1.3E-31 |
| 1 | g1765.t13 | Pfam | PF12999 | Glucosidase II beta subunit-like | 81 | 183 | 1.8E-21 |
| 5 | g1765.t13 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 7 | g1765.t13 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 40 | - |
| 6 | g1765.t13 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 41 | 185 | - |
| 4 | g1765.t13 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006491 | N-glycan processing | BP |
KEGG
Orthology
- This transcript has been annotated with K01187 (alpha-glucosidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
