General information for g17692.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17692 is located on HiC_scaffold_69: 1939..3539 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_69 | g17692 | g17692.t1 | TSS | g17692.t1 | 1846 | 1846 |
| HiC_scaffold_69 | g17692 | g17692.t1 | isoform | g17692.t1 | 1939 | 3539 |
| HiC_scaffold_69 | g17692 | g17692.t1 | exon | g17692.t1.exon1 | 1939 | 2067 |
| HiC_scaffold_69 | g17692 | g17692.t1 | cds | g17692.t1.CDS1 | 1939 | 2067 |
| HiC_scaffold_69 | g17692 | g17692.t1 | exon | g17692.t1.exon2 | 2124 | 2267 |
| HiC_scaffold_69 | g17692 | g17692.t1 | cds | g17692.t1.CDS2 | 2124 | 2267 |
| HiC_scaffold_69 | g17692 | g17692.t1 | exon | g17692.t1.exon3 | 2328 | 2525 |
| HiC_scaffold_69 | g17692 | g17692.t1 | cds | g17692.t1.CDS3 | 2328 | 2525 |
| HiC_scaffold_69 | g17692 | g17692.t1 | TTS | g17692.t1 | NA | NA |
Sequences
>g17692.t1 Gene=g17692 Length=471
ATGCTCGAAAATGAGTGTGGTCAAGCTAATCCACTCATGCGACTTGGGCAACAGCTTACA
AGCGATACAACACTTCGTGATGAAGGAATTTCAGCAAATTTCCGCGACATGAATTTTCAA
CCAGAAAATACTTTTAGAATGGATATGTTGCTGAAGGAAATGCAAGAGATGGATAAAATT
GTTCAACAACCAGTTTTAGGACCAAAAATCAATGAAGTCATCAGTGAAACAGCAAATGCA
AATGCAGTTGGAATGGACAATAATTTTGTTGAATTTTGGCAAAAAAGTCTTGCACAACCA
TCAACTTCTCAGCAATCAAATTTTCTTAATTGGAACAACAACAATATACCTTCAACTTCA
AATTATCGTCCATATCAGCGACCGAATTACACACAGTTTTTCCCTTCAACTTCTAATGTT
GGATATTCACAAGCATTCTTTCAACAAACAGCAAATGATTTCTTCAAAGAA
>g17692.t1 Gene=g17692 Length=157
MLENECGQANPLMRLGQQLTSDTTLRDEGISANFRDMNFQPENTFRMDMLLKEMQEMDKI
VQQPVLGPKINEVISETANANAVGMDNNFVEFWQKSLAQPSTSQQSNFLNWNNNNIPSTS
NYRPYQRPNYTQFFPSTSNVGYSQAFFQQTANDFFKE
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
