General information for g17698.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Pickpocket protein 28.
Parent gene
- The parent gene g17698 is located on HiC_scaffold_79: 452..2385 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_79 | g17698 | g17698.t1 | isoform | g17698.t1 | 1045 | 2385 |
| HiC_scaffold_79 | g17698 | g17698.t1 | exon | g17698.t1.exon1 | 1045 | 2385 |
| HiC_scaffold_79 | g17698 | g17698.t1 | cds | g17698.t1.CDS1 | 1045 | 2385 |
| HiC_scaffold_79 | g17698 | g17698.t1 | TSS | g17698.t1 | NA | NA |
| HiC_scaffold_79 | g17698 | g17698.t1 | TTS | g17698.t1 | NA | NA |
Sequences
>g17698.t1 Gene=g17698 Length=1341
ATGTTGAAAGCAACAGTAAAATATTTAGCTCAAGAAACTTCAATTCATGGTTTTAAATTT
TTAGCCAATAAAAAAGTCAATAAATTTCTTCGTTTGTTTTGGTTTTTTAGTTTGCTGTTG
TCAATCAGTGTTCTATTGTGGTATGCAAAAGGTCTTTATGTTAAACTTAATTTTGAACCA
GAAATTAATGTACGAGTGAAATTTAAGTCTATGAGTGAAATTCCTTTTCCTGCTGTTACA
ATTTGTGATTCTGTTTTTGCTAAAAATAATTCAATTAATTTCATTCAATATTTCAACAAT
AAAAGACTTAATAGTCAGAAAAATATGACTGTTGAAGGAAAACACATTATGGCTGCAAAT
ATTCACGTTTGTGCACCTCATTTAAGCTTTTTTAATCAGGATTTTGATGATAAAAGATCA
GATTTTGACATAGTGAAAGTTTTGAATGATTCTTCATTGCGAACAGATGAAATTTTTCTT
TTATGTTCATATAAAAAAACTTTAGCTGCAGATTGTAATAATATTTTTAATAAAGTTTTA
ACAGATAATGGTTTTTGTCATAGTGCAAATATGCAAGGTTATAACACGATATTTAACAAA
AATGTTTTAAGTAAAGATTTCGATTCATATAAGAGAAAAAATATCAGCAGTTCTTGGCTA
CATAAGACACGACAAGTCAACGATGATAATGAAACGATTTATTGGACACTAGATAGTGGC
TATATTGATGATAGTGATGATAGCAATGTCATTCCTAAAAGAGCAAATAAGCAAAACTTT
TTCAACAACTATTTATTTATTAATCACATTGATAAAGAAAATTATTGTCCACAGCTTGGA
AAAATTTTTAAAATTTTCTTTCATTTACCAAATGAAATGCCAACAATTTTTAACAGAGAG
TATTCAATTGAAATCGGTCATCAAAAATTGATGTTTTTAAATGCTAAACTTTATACAAGC
GATGAAAGTTTAAAAGGTTACACACCAAAACAGCGTCAGTGTTACTTTGAGGGAGAAAAA
AACTTAAAATTTTTCAAATCTTATACAAAATCTCACTGTGATTGGGAATGTGTCACTAAT
TATACACTTGATATTTGTGGTTGCACGAAGTTTTCAATGCCAAGAGATAATAATACTCCA
GTATGTGACATGCAGAAGAAAAAGTGTTATTATAACGCTATGTTAACATGGCCTAACAAT
CGATCATTTTATGAGAATAATGACAATCCATGTGATTGCTATGAAACATGCAATGATATA
AAATATGAAATAAACTATGAAGATGATTCAGATTTCCATAATTTTTATTCATTGTCTCTT
TTGAAAAATGCACAAGAGTAA
>g17698.t1 Gene=g17698 Length=446
MLKATVKYLAQETSIHGFKFLANKKVNKFLRLFWFFSLLLSISVLLWYAKGLYVKLNFEP
EINVRVKFKSMSEIPFPAVTICDSVFAKNNSINFIQYFNNKRLNSQKNMTVEGKHIMAAN
IHVCAPHLSFFNQDFDDKRSDFDIVKVLNDSSLRTDEIFLLCSYKKTLAADCNNIFNKVL
TDNGFCHSANMQGYNTIFNKNVLSKDFDSYKRKNISSSWLHKTRQVNDDNETIYWTLDSG
YIDDSDDSNVIPKRANKQNFFNNYLFINHIDKENYCPQLGKIFKIFFHLPNEMPTIFNRE
YSIEIGHQKLMFLNAKLYTSDESLKGYTPKQRQCYFEGEKNLKFFKSYTKSHCDWECVTN
YTLDICGCTKFSMPRDNNTPVCDMQKKKCYYNAMLTWPNNRSFYENNDNPCDCYETCNDI
KYEINYEDDSDFHNFYSLSLLKNAQE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g17698.t1 | Gene3D | G3DSA:1.10.287.770 | - | 31 | 61 | 5.0E-14 |
| 7 | g17698.t1 | Gene3D | G3DSA:2.60.470.10 | - | 62 | 194 | 5.0E-14 |
| 8 | g17698.t1 | Gene3D | G3DSA:1.10.3590.10 | - | 85 | 153 | 5.0E-14 |
| 6 | g17698.t1 | Gene3D | G3DSA:2.60.470.10 | - | 269 | 426 | 2.3E-20 |
| 9 | g17698.t1 | Gene3D | G3DSA:1.10.3590.10 | - | 271 | 282 | 2.3E-20 |
| 10 | g17698.t1 | Gene3D | G3DSA:1.10.287.820 | - | 326 | 417 | 2.3E-20 |
| 2 | g17698.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 5 | 424 | 5.1E-43 |
| 3 | g17698.t1 | PANTHER | PTHR11690:SF243 | PICKPOCKET 12-RELATED | 5 | 424 | 5.1E-43 |
| 1 | g17698.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 11 | 432 | 9.5E-52 |
| 12 | g17698.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 28 | - |
| 14 | g17698.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 29 | 49 | - |
| 13 | g17698.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 50 | 446 | - |
| 5 | g17698.t1 | ProSitePatterns | PS01206 | Amiloride-sensitive sodium channels signature. | 348 | 368 | - |
| 4 | g17698.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 29 | 48 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed