Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Pickpocket protein 28.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
HiC_scaffold_79 g17698 g17698.t2 isoform g17698.t2 452 2385
HiC_scaffold_79 g17698 g17698.t2 exon g17698.t2.exon1 452 632
HiC_scaffold_79 g17698 g17698.t2 cds g17698.t2.CDS1 452 632
HiC_scaffold_79 g17698 g17698.t2 exon g17698.t2.exon2 689 851
HiC_scaffold_79 g17698 g17698.t2 cds g17698.t2.CDS2 689 851
HiC_scaffold_79 g17698 g17698.t2 exon g17698.t2.exon3 907 992
HiC_scaffold_79 g17698 g17698.t2 cds g17698.t2.CDS3 907 992
HiC_scaffold_79 g17698 g17698.t2 exon g17698.t2.exon4 1049 2385
HiC_scaffold_79 g17698 g17698.t2 cds g17698.t2.CDS4 1049 2385
HiC_scaffold_79 g17698 g17698.t2 TSS g17698.t2 NA NA
HiC_scaffold_79 g17698 g17698.t2 TTS g17698.t2 NA NA

Sequences

>g17698.t2 Gene=g17698 Length=1767
ATGTTGAAAGCAACAGTAAAATATTTAGCTCAAGAAACTTCAATTCATGGTTTTAAATTT
TTAGCCAATAAAAAAGTCAATAAATTTCTTCGTTTGTTTTGGTTTTTTAGTTTGCTGTTG
TCAATCAGTGTTCTATTGTGGTATGCAAAAGGTCTTTATGTTAAACTTAATTTTGAACCA
GAAATTAATGTACGAGTGAAATTTAAGTCTATGAGTGAAATTCCTTTTCCTGCTGTTACA
ATTTGTGATTCTGTTTTTGCTAAAAATAATTCAATTAATTTCATTCAATATTTCAACAAT
AAAAGACTTAATAGTCAGAAAAATATGACTGTTGAAGGAAAACACATTATGGCTGCAAAT
ATTCACGTTTGTGCACCTCATTTAAGCTTTTTTAATCAGGATTTTGATGATAAAAGATCA
GATTTTGACATAGTGAAAGTTTTGAATGATTCTTCATTGCGAACAGATGAAATTTTTCTT
TTATGTTCATATAAAAAAACTTTAGCTGCAGATTGTAATAATATTTTTAATAAAGTTTTA
ACAGATAATGGTTTTTGTCATAGTGCAAATATGCAAGGTTATAACACGATATTTAACAAA
AATGTTTTAAGTAAAGATTTCGATTCATATAAGAGAAAAAATATCAGCAGTTCTTGGCTA
CATAAGACACGACAAGTCAACGATGATAATGAAACGATTTATTGGACACTAGATAGTGGC
TATATTGATGATAGTGATGATAGCAATGTCATTCCTAAAAGAGCAAATAAGCAAAACTTT
TTCAACAACTATTTATTTATTAATCACATTGATAAAGAAAATTATTGTCCACAGCTTGGA
AAAATTTTTAAAATTTTCTTTCATTTACCAAATGAAATGCCAACAATTTTTAACAGAGAG
TATTCAATTGAAATCGGTCATCAAAAATTGATGTTTTTAAATGCTAAACTTTATACAAGC
GATGAAAGTTTAAAAGGTTACACACCAAAACAGCGTCAGTGTTACTTTGAGGGAGAAAAA
AACTTAAAATTTTTCAAATCTTATACAAAATCTCACTGTGATTGGGAATGTGTCACTAAT
TATACACTTGATATTTGTGGTTGCACGAAGTTTTCAATGCCAAGAGATAATAATACTCCA
GTATGTGACATGCAGAAGAAAAAGTGTTATTATAACGCTATGTTAACATGGCCTAACAAT
CGATCATTTTATGAGAATAATGACAATCCATGTGATTGCTATGAAACATGCAATGATATA
AAATATGAAATAAACTATGAAGATGATTCAGATTTCCATAATTTTTATTCATTGTCTCTT
TTGAAAAATGCACAAGATGGAAAACTTACTTATTTACGATTACAATTTAAAAGCCATATG
CTTGAAGTTTATGAAAAATACGCAAGCTATAAGTTGCAGAATTTTATTGCTGACTTTGGT
GGATTGTTAGGACTTTTCTTAGGCTGCTCATTAATTTCCATTGCTGAAATTGTATTTATA
CTTGTTCATTTGTTTTCTGACTCGAAAAAAATTAAAAATTCTGATGAAATACAAGCAATA
CATCAACAAAAGAATGAAGGAATACAAGTGTTTTCATCGAATAATGATTATCACTTAAAT
CAACCTAATTATTTTTTGTCAAAACAGGATTTTCTACAAATGAATAAAAATATGAAACGA
TTGGAACAAAAAATTGATGATTTGCAAATTCAATATAATGTTGAAATTTTGAGCACATTG
TTACAGTATAAGAAAGCTTCTAAGTAA

>g17698.t2 Gene=g17698 Length=588
MLKATVKYLAQETSIHGFKFLANKKVNKFLRLFWFFSLLLSISVLLWYAKGLYVKLNFEP
EINVRVKFKSMSEIPFPAVTICDSVFAKNNSINFIQYFNNKRLNSQKNMTVEGKHIMAAN
IHVCAPHLSFFNQDFDDKRSDFDIVKVLNDSSLRTDEIFLLCSYKKTLAADCNNIFNKVL
TDNGFCHSANMQGYNTIFNKNVLSKDFDSYKRKNISSSWLHKTRQVNDDNETIYWTLDSG
YIDDSDDSNVIPKRANKQNFFNNYLFINHIDKENYCPQLGKIFKIFFHLPNEMPTIFNRE
YSIEIGHQKLMFLNAKLYTSDESLKGYTPKQRQCYFEGEKNLKFFKSYTKSHCDWECVTN
YTLDICGCTKFSMPRDNNTPVCDMQKKKCYYNAMLTWPNNRSFYENNDNPCDCYETCNDI
KYEINYEDDSDFHNFYSLSLLKNAQDGKLTYLRLQFKSHMLEVYEKYASYKLQNFIADFG
GLLGLFLGCSLISIAEIVFILVHLFSDSKKIKNSDEIQAIHQQKNEGIQVFSSNNDYHLN
QPNYFLSKQDFLQMNKNMKRLEQKIDDLQIQYNVEILSTLLQYKKASK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g17698.t2 Coils Coil Coil 551 578 -
15 g17698.t2 Gene3D G3DSA:1.10.287.770 - 31 61 7.1E-14
10 g17698.t2 Gene3D G3DSA:2.60.470.10 - 62 194 7.1E-14
11 g17698.t2 Gene3D G3DSA:1.10.3590.10 - 85 153 7.1E-14
9 g17698.t2 Gene3D G3DSA:2.60.470.10 - 270 468 5.2E-35
12 g17698.t2 Gene3D G3DSA:1.10.3590.10 - 271 282 5.2E-35
13 g17698.t2 Gene3D G3DSA:1.10.287.820 - 326 417 5.2E-35
14 g17698.t2 Gene3D G3DSA:1.10.287.770 - 469 497 5.2E-35
2 g17698.t2 PANTHER PTHR11690 AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED 5 520 3.7E-52
3 g17698.t2 PANTHER PTHR11690:SF243 PICKPOCKET 12-RELATED 5 520 3.7E-52
6 g17698.t2 PRINTS PR01078 Amiloride-sensitive sodium channel alpha-subunit signature 31 48 2.4E-10
8 g17698.t2 PRINTS PR01078 Amiloride-sensitive sodium channel alpha-subunit signature 72 88 2.4E-10
5 g17698.t2 PRINTS PR01078 Amiloride-sensitive sodium channel alpha-subunit signature 359 376 2.4E-10
4 g17698.t2 PRINTS PR01078 Amiloride-sensitive sodium channel alpha-subunit signature 466 480 2.4E-10
7 g17698.t2 PRINTS PR01078 Amiloride-sensitive sodium channel alpha-subunit signature 480 496 2.4E-10
1 g17698.t2 Pfam PF00858 Amiloride-sensitive sodium channel 11 499 1.7E-68
18 g17698.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 28 -
21 g17698.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 29 49 -
19 g17698.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 50 478 -
20 g17698.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 479 505 -
17 g17698.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 506 588 -
24 g17698.t2 ProSitePatterns PS01206 Amiloride-sensitive sodium channels signature. 348 368 -
22 g17698.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 48 -
23 g17698.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 483 505 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0005272 sodium channel activity MF
GO:0006814 sodium ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed