General information for g17780.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Plexin-B.
Parent gene
- The parent gene g17780 is located on HiC_scaffold_345: 11974..22494 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_345 | g17780 | g17780.t1 | isoform | g17780.t1 | 11974 | 22494 |
| HiC_scaffold_345 | g17780 | g17780.t1 | exon | g17780.t1.exon1 | 11974 | 13907 |
| HiC_scaffold_345 | g17780 | g17780.t1 | cds | g17780.t1.CDS1 | 11974 | 13907 |
| HiC_scaffold_345 | g17780 | g17780.t1 | exon | g17780.t1.exon2 | 14163 | 14340 |
| HiC_scaffold_345 | g17780 | g17780.t1 | cds | g17780.t1.CDS2 | 14163 | 14340 |
| HiC_scaffold_345 | g17780 | g17780.t1 | exon | g17780.t1.exon3 | 14990 | 15193 |
| HiC_scaffold_345 | g17780 | g17780.t1 | cds | g17780.t1.CDS3 | 14990 | 15193 |
| HiC_scaffold_345 | g17780 | g17780.t1 | exon | g17780.t1.exon4 | 15404 | 18648 |
| HiC_scaffold_345 | g17780 | g17780.t1 | cds | g17780.t1.CDS4 | 15404 | 18648 |
| HiC_scaffold_345 | g17780 | g17780.t1 | exon | g17780.t1.exon5 | 18726 | 18906 |
| HiC_scaffold_345 | g17780 | g17780.t1 | cds | g17780.t1.CDS5 | 18726 | 18906 |
| HiC_scaffold_345 | g17780 | g17780.t1 | exon | g17780.t1.exon6 | 19002 | 19184 |
| HiC_scaffold_345 | g17780 | g17780.t1 | cds | g17780.t1.CDS6 | 19002 | 19184 |
| HiC_scaffold_345 | g17780 | g17780.t1 | exon | g17780.t1.exon7 | 22393 | 22494 |
| HiC_scaffold_345 | g17780 | g17780.t1 | cds | g17780.t1.CDS7 | 22393 | 22494 |
| HiC_scaffold_345 | g17780 | g17780.t1 | TSS | g17780.t1 | NA | NA |
| HiC_scaffold_345 | g17780 | g17780.t1 | TTS | g17780.t1 | NA | NA |
Sequences
>g17780.t1 Gene=g17780 Length=6027
ATGACCGTCCGTTGTAAAGTGTTGCTGCATCAAATTACAACAAATACATGCATACTGCTA
TTGGCACTAATTCTTACAATCAAATTTGAAGCACCGATAGCAGTATTGGCAGCGAATGCA
GCGACAACTGCGAGCACATTAAATAGTAATAATAATATTATATTGTCGCAATATCAATTA
CAAAATGACTCCTATTTTACCCATTTGGTGTATGATAAAAAGCGCTCGTGCCTCTATGCT
GGCGCAACAAATCGGATTATTCAGTTCAATAAGAATTTAACTGTAATCAATACTAGTATA
ACAGGACCTAAGCCTGATAGTCCTGTATGTCATGCTGGCGGTTGTCCTGAGGATGTTGAG
ACAATTGAAACAAATAATTTCAATAAACTTCTTATTCTAAATAAATTTGGTGATTCGCTA
ATTTCATGCGGAAGTTTACATCAAGGTGCTTGTGAAATATACGAAAACCTCAATAATTTT
CCCAAAGCACCAAAATATATTGAATTGCCAGTTGTCGCTAATGATGAGAATTCGAGCAGT
TACGCATTTATCGGTCCATCACGCTATACAGCATGGCAACGCGAAGATATTCTATACGTA
GGAATCACATTCACAAATGTGGGTGATTATCGTGACAACGTGCCAGCAATTGCATCAAGA
AAACTGGATGATTTAAATTATGCCGAGTTTTCAATACAGCAATCAAACATTAACATCGAT
GTAAAATATCGAGATCATTTTCTCGTAAATTATATTTATGGATTTAACAGTACCGATTAT
GCATATTTTGTGATAGTTCAAAAGAAAAATCATCTCGTCGAAGAGGCAGGATATCATACA
CGTCTTGCGCGTATTTGTGTTACTGATCCCAATTATGACAGTTATACTGAAGTGACACTG
TCATGTTTAGTTAAGAATCAAGATTATAATATTTTACGTGATGCCAAATTGACAGAAGCA
GGAACACGATTAGGTCAAAAGCTTGGCATTCGAAAAGATGACCAAGTTCTTGTCACAACA
TTCTCGCCTAGTAAAGAAATTACATCAGAACCACAAAATTCATCTGCAATTTGTGTTTAC
ACGTTAAAAGACATTGAAGAAATGTTTAATGAAAATATTCACATGTGTTTCAATGGCACA
ATTAAGGATCGTAATTTGGGTTACATTTCTGGCTCAATTTTAGATGGAAAATGCCCAGTT
GTTGGTTCTATTGGAAATATTCATGACTTTTGTCATGCTGGCCTAAAAATTTCCGGTGTT
GCTGCCATTACTGCAAATGCAATTTTCAATTTTGACAGTGAACTTGTGACATCAGTAATA
ACGACAATAACTGGTCCACATATAATTGCATTTCTCGGCACATCAGAGGGAAATATCAAA
AAAGTGATATTATCAGAGCCTTCAGTTGGTGAATATGACCGAGTCGAAGTTGATCCAGAA
AACTCAATACTCCCAGACACAATGGTCTCGCCTGAGCAAGATGTTTTATATGTGCTATCA
CGTAAGAAAATAACAAAAATGAAAATTGAAAATTGTGCATCGCATACAACTTGCTCAAGT
TGTCTCGGCTCGAATGATTTAATGTGCGGTTGGTGTTCACTTGAGAAACGCTGCACAGTT
CGTAGTGCATGTCAGCGTGACACAAGTGCATCACGTTGGCTTTCAATTGGTGCGGGTCAA
CAGTGCATCGATTTTGAGACAGCTGACCCTGACCGAGTTCCAATCGATCAAATGACTACA
ATTAATTTAGTCATAAAAACATTACCGGAATTACCATCAAATGCTAAATATAAATGTGTA
TTCGGCAATTCGACGCCAATTGATGCTGCTGTAACAAAGAATGGACTGATTTGCCAAACA
CCACAAGTCAAATATCGGCCAACAATTGAGTTTGGCAAGGACCATGTTTTAGTTCCGTTA
TCCGTTCGTTCAAGCGAGACAAACAAGGATTTTGTATCGAGAAGTTTTGCATTCTTCGAT
TGCTCAGTACATGAATCATGCTTCAAGTGCTTAAAATCACAATGGAATTGCAATTGGTGC
ATATACGATAATAAATGTGTTTTCGAGAACTCTACATGCAGAAATACAGCAAATACGATA
ACCGTTGAGAATCAATGTCCTCGCATAAAAGCACCGAAAAATGAAATTCTGTTGCCCAAT
AAAGTGCCAAAAGAGATAAAATTGGAAATAATTAATTTACCACGCCCGCAAAGTGCTCAT
TCGGGATTTTTATGTATTGTGAACATAGAAGGTGCTCACATGATTTTACCAGCACGAATT
GAAGCTAATAAATACATTGTGTGCGATAAAACTCCCTACTCATATGAAGCGAATACCAAT
GAATATAAAGCAAAAGTTGATGTAACGTGGAATAGAAATCATTATATTGATACAATTAGC
ATTACACTATATAAATGCGATGTGTTAGGCTCACATAAAGAGCATGCTGATTGCAGTTTA
TGTGTCACTCGAGATCCAAAATATCAATGCACATGGTGCAGTAATCAATGTGTATTTAAT
GATACTTGCATTCATGGTAGCACAGCTGAATGTCCACGACCAAGAATTGATTCGATTAGA
CCGCTTTCAGGACCAATTGAAGGCGGCACATTGGTAACAATTGAAGGAAGTAATCTCGGT
ATACGCGAAGATGACGTGAGAGGCAAAATTAGAATCGGAAATGTCCTCTGTGAATTAGTA
AATTACGAGATATCAGTGAAAATTGAATGTCGCACGGGCGCTGTAGAAAAGGAAATTACG
GCAACAGTAAAAGTCGGAAACGAGGCGGGAGTGACAGAATCTAATGTATATTTTCAATAT
AAAGACTTCAAAGTAGAGCGAATTGCGCCGACGCAGGGTCCACAATCGGGTGGCACACAG
GTTCAAATCTTTGGTCGCCATCTAAATATTGGCTCGAGTGTTATTGCATATTTAGATGAC
TACATTTGCCATATTAACATAACACATGCTACCAATGATCGACTCGTTTGCACAACAACT
GCTTCACGTTCACCCGAATTTATTCGCACCCTCACATTAATTGTCGATCTCGCAAATCGA
ACCCTCCAATGCAAAAACAACGTCGCCGGAAAAGGCCATAATTCAAATGATATCGGTGCG
GTCACATCATATGCTAATGGAAATGGAATGCGTCATGGTGCTTGCAGTATATACAATTAT
ACGGTCGATCCAAAAATCATGCAAATTAAGCCTTTGAAGAGTTTTAAGAGTGGTGGTCGC
ATGATTACCGTTCATGGCACTAATCTTCACACGATTCAACGACCACAAATGGAAGTAATT
TTTGGTGATGAAAGCATTAATCGAACTGACTGCACAGTAATTAATCCAAATCAGATGGAA
TGTCCATCACCAGCTGTTAGTGAGAAATTTCGATCCTATTTCATTGCACAAAAGACCAAG
ACGAAACGCAACATTGTTAGTCGAACTGACAATTATCGTTATTCAACTTCAACGTCGCCT
TATATGACACCATCAGTTGCATATGCCATTCAAGAGACACAACTCAATTTTCAAATTAGC
TTCATTATGGATAATGTCAAGAGTGTTCGAGATCTCAATAAACATTTCCAACATATTCGC
AGCAATATGATTTATGTCGATGATCCTGTCTTCTTTCCCTTCCTTAATTCAATTCGGCTT
TATAAAGGTGATACACTTGTTATTGAAGGTGAAAATTTAAATCTTGCCTGTGACGAAAGT
GATGTGATTGTAACAGTAGGACAATTGCATTGTAATGTAACAAGTTTAGCTCTAGCACAG
CTCGTTTGTACACCACCCGCTCAACAGCCTCCATCTACAGACGAATATGGCAATGAGAAT
GATATCGATTTACCATTAGTAGTCGTGCGGGTTGGACAGAAGCTACGTTTTCCACTCGGC
TATTTGAAATATGATTTATTAAAGCCATATGCCTTCTCACAAGCAATGATTGTGATTGCA
GCCTCGACCTTTGTTTTGGCTATTGTGCTTGTATTCATCCTAATTGTTTATAGACGAAAG
ACAACTCAGGCAGAACGCGAGTATAAAAAAATTCAAATACAGATGGATACACTTGAAAGT
AATGTTCGTCTTGAATGTAAACAGGCCTTTGCAGAACTACAAACTGATATCATAGATTTG
ACAGCCGATTTAGAAAATCAAGGCATTCCAACGCTAGATCATGTCAATTATATTATGAAA
GTTTTCTTTCCTGGCGTTTCAGATCATCCAATTTTAAATGGTCATAAGGGTCGAATGAAT
ATGCTTCGTACAAATTACGACGCAGCTATGTTGCAATTTGAGCAGTTAATTAACAACAAA
TTCTTCCTTCTGACATTCATCGAAACTTTAGAAGCACAACGTACTTTTAACATTCGTGAT
AAGGTCAATGTTGCATCTTTACTGATGATTGTGCTTATGAACAAAATGGAATATGCCACG
GATATCCTAAAATGGCTGTTATTGCGGCTTGTCGATAAATCAGTGATGACAAAACATCCG
CATTTAATGCTGAGACGAACAGAGAGTGTGGTTGAGAAAATGTTAACCAACTATATGGCC
ATTTGTATGTACAATTATTTACGTGAATATAGTGGCTCATCACTCTTCCTACTCTTTCGA
GCTATAAAACATCAAGTAGAAAAAGGTTTAGTCGATGCAATAACACATGAGGCACGTTAC
TCACTCTCTGAGGACCGTTTGCTTCGTGAACAAGTCGATACGAATGTCGTGACACTGCAT
ATATTGCAAGACGACCTCGAAGATAAAGTGCAATGTAAAGTCCTGGATCAGGACACAATC
ACACAAGTCAAGTCGAAAATTCTCGACGCTCTCTTCAAAAACACTCCCTTCTCAATGCGT
CCATCAGTGCATGATGTTGATTTAGAATGGAGGCATGGTCGTGGTGGTCATTTAACATTA
CAAGATGAAGATCTAACGACAAAAACCTTAAATGGATGGAAACGACTGAATACTTTGGCA
CATTATGGTGTCAAAGAGTCGGCTGTGATGTCACTCGTTGCACGCCAGCACGATTCTTAT
AACATCAACACGTACAGTAAAAATATGTATCCAAATTGTTATTACATCAACAATACACAA
ACGCATGTGCTGATTAATGGCGTGTTAGATTCTTCAGGCATGCATCATCACCATCATCCA
CAATTTATCAATCAAAATCAAACGCTTACCAGTGGTAGTCATAAACAACAATATTGTCGA
GTATATCATCTGGTCAAATCGAATTTGGATGAGCATTATTTTGGCTCGACAACTTTCGGA
AGTAGTAAAAATTCATCACATCATCCTTTCCTTCCACCGTCCAATAATTGTGCGACAGTT
GAACGCACACATAAAGCCATTCCTGAGATCTATTTAACGAGACTTCTCGCCACGAAAGGA
ACGATACAGAAATTTGTTGATGATTTCTTCATGACAATATTGACAGTCAATGAAAAGTTG
CCACCCGCTGTCAAATGGCTCTTTGACTTACTCGACGATGCAGCACGACGACATCCAGAG
ACTAATGATCCAAAAATCATTCATGCTTGGAAGTCAAATAGTTTACCCCTGAGGTTTTGG
GTGAATTTCATAAAAAATCCAGATTTTATATTCGACATAAATAAGACAGTGACAGTAGAT
GCGTGCCTAAGTGTAGTCGCTCAAACATTCATGGATGCATGTTCGACAAATGAGCATCGT
TTGGGAAAAGACTCGCCATCAAATAAATTGCTATTTGCAAAAGACTTGCCACATTATAGA
GAAATGGTGTCACAGTTTTATGCGGATGTTGCCCGTTTACCTCAAATCAGTGATCAAGAG
ATGACCGCGAGCATGCAGAACTTGTCCATTCAGCAGAACGATGAATTTGATACAATTGCA
GCTCTAAAAGAGCTGTATATTTACGTGACGACATACAAGGAACAAATAATTGACGCCCTC
GAAATGGACATCAATTGCAAAAAACTCCATCTTGCCAATAAACTCGAGAATGTTGGCGTC
ACGCTGGACGGAATAGACGATTGCTGA
>g17780.t1 Gene=g17780 Length=2008
MTVRCKVLLHQITTNTCILLLALILTIKFEAPIAVLAANAATTASTLNSNNNIILSQYQL
QNDSYFTHLVYDKKRSCLYAGATNRIIQFNKNLTVINTSITGPKPDSPVCHAGGCPEDVE
TIETNNFNKLLILNKFGDSLISCGSLHQGACEIYENLNNFPKAPKYIELPVVANDENSSS
YAFIGPSRYTAWQREDILYVGITFTNVGDYRDNVPAIASRKLDDLNYAEFSIQQSNINID
VKYRDHFLVNYIYGFNSTDYAYFVIVQKKNHLVEEAGYHTRLARICVTDPNYDSYTEVTL
SCLVKNQDYNILRDAKLTEAGTRLGQKLGIRKDDQVLVTTFSPSKEITSEPQNSSAICVY
TLKDIEEMFNENIHMCFNGTIKDRNLGYISGSILDGKCPVVGSIGNIHDFCHAGLKISGV
AAITANAIFNFDSELVTSVITTITGPHIIAFLGTSEGNIKKVILSEPSVGEYDRVEVDPE
NSILPDTMVSPEQDVLYVLSRKKITKMKIENCASHTTCSSCLGSNDLMCGWCSLEKRCTV
RSACQRDTSASRWLSIGAGQQCIDFETADPDRVPIDQMTTINLVIKTLPELPSNAKYKCV
FGNSTPIDAAVTKNGLICQTPQVKYRPTIEFGKDHVLVPLSVRSSETNKDFVSRSFAFFD
CSVHESCFKCLKSQWNCNWCIYDNKCVFENSTCRNTANTITVENQCPRIKAPKNEILLPN
KVPKEIKLEIINLPRPQSAHSGFLCIVNIEGAHMILPARIEANKYIVCDKTPYSYEANTN
EYKAKVDVTWNRNHYIDTISITLYKCDVLGSHKEHADCSLCVTRDPKYQCTWCSNQCVFN
DTCIHGSTAECPRPRIDSIRPLSGPIEGGTLVTIEGSNLGIREDDVRGKIRIGNVLCELV
NYEISVKIECRTGAVEKEITATVKVGNEAGVTESNVYFQYKDFKVERIAPTQGPQSGGTQ
VQIFGRHLNIGSSVIAYLDDYICHINITHATNDRLVCTTTASRSPEFIRTLTLIVDLANR
TLQCKNNVAGKGHNSNDIGAVTSYANGNGMRHGACSIYNYTVDPKIMQIKPLKSFKSGGR
MITVHGTNLHTIQRPQMEVIFGDESINRTDCTVINPNQMECPSPAVSEKFRSYFIAQKTK
TKRNIVSRTDNYRYSTSTSPYMTPSVAYAIQETQLNFQISFIMDNVKSVRDLNKHFQHIR
SNMIYVDDPVFFPFLNSIRLYKGDTLVIEGENLNLACDESDVIVTVGQLHCNVTSLALAQ
LVCTPPAQQPPSTDEYGNENDIDLPLVVVRVGQKLRFPLGYLKYDLLKPYAFSQAMIVIA
ASTFVLAIVLVFILIVYRRKTTQAEREYKKIQIQMDTLESNVRLECKQAFAELQTDIIDL
TADLENQGIPTLDHVNYIMKVFFPGVSDHPILNGHKGRMNMLRTNYDAAMLQFEQLINNK
FFLLTFIETLEAQRTFNIRDKVNVASLLMIVLMNKMEYATDILKWLLLRLVDKSVMTKHP
HLMLRRTESVVEKMLTNYMAICMYNYLREYSGSSLFLLFRAIKHQVEKGLVDAITHEARY
SLSEDRLLREQVDTNVVTLHILQDDLEDKVQCKVLDQDTITQVKSKILDALFKNTPFSMR
PSVHDVDLEWRHGRGGHLTLQDEDLTTKTLNGWKRLNTLAHYGVKESAVMSLVARQHDSY
NINTYSKNMYPNCYYINNTQTHVLINGVLDSSGMHHHHHPQFINQNQTLTSGSHKQQYCR
VYHLVKSNLDEHYFGSTTFGSSKNSSHHPFLPPSNNCATVERTHKAIPEIYLTRLLATKG
TIQKFVDDFFMTILTVNEKLPPAVKWLFDLLDDAARRHPETNDPKIIHAWKSNSLPLRFW
VNFIKNPDFIFDINKTVTVDACLSVVAQTFMDACSTNEHRLGKDSPSNKLLFAKDLPHYR
EMVSQFYADVARLPQISDQEMTASMQNLSIQQNDEFDTIAALKELYIYVTTYKEQIIDAL
EMDINCKKLHLANKLENVGVTLDGIDDC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 36 | g17780.t1 | CDD | cd11236 | Sema_plexin_like | 65 | 510 | 4.22477E-133 |
| 37 | g17780.t1 | CDD | cd01180 | IPT_plexin_repeat1 | 854 | 942 | 9.26096E-27 |
| 39 | g17780.t1 | CDD | cd00603 | IPT_PCSR | 1223 | 1297 | 1.19229E-5 |
| 38 | g17780.t1 | CDD | cd12205 | RasGAP_plexin | 1785 | 1998 | 1.24542E-114 |
| 28 | g17780.t1 | Coils | Coil | Coil | 1341 | 1361 | - |
| 22 | g17780.t1 | Gene3D | G3DSA:2.130.10.10 | - | 57 | 522 | 1.6E-116 |
| 26 | g17780.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 523 | 662 | 8.4E-41 |
| 25 | g17780.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 672 | 807 | 4.6E-16 |
| 23 | g17780.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 824 | 942 | 8.1E-28 |
| 27 | g17780.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 943 | 1027 | 3.1E-10 |
| 24 | g17780.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 1060 | 1158 | 5.6E-8 |
| 10 | g17780.t1 | PANTHER | PTHR22625:SF65 | PLEXIN A, ISOFORM A | 37 | 1020 | 0.0 |
| 13 | g17780.t1 | PANTHER | PTHR22625 | PLEXIN | 37 | 1020 | 0.0 |
| 11 | g17780.t1 | PANTHER | PTHR22625:SF65 | PLEXIN A, ISOFORM A | 1019 | 1132 | 0.0 |
| 14 | g17780.t1 | PANTHER | PTHR22625 | PLEXIN | 1019 | 1132 | 0.0 |
| 9 | g17780.t1 | PANTHER | PTHR22625:SF65 | PLEXIN A, ISOFORM A | 1157 | 1999 | 0.0 |
| 12 | g17780.t1 | PANTHER | PTHR22625 | PLEXIN | 1157 | 1999 | 0.0 |
| 1 | g17780.t1 | Pfam | PF01403 | Sema domain | 68 | 483 | 9.6E-41 |
| 7 | g17780.t1 | Pfam | PF01437 | Plexin repeat | 511 | 557 | 9.7E-9 |
| 8 | g17780.t1 | Pfam | PF17960 | TIG domain | 570 | 659 | 1.2E-22 |
| 2 | g17780.t1 | Pfam | PF18020 | TIG domain found in plexin | 715 | 804 | 6.9E-24 |
| 3 | g17780.t1 | Pfam | PF01833 | IPT/TIG domain | 854 | 940 | 4.9E-12 |
| 4 | g17780.t1 | Pfam | PF01833 | IPT/TIG domain | 1064 | 1154 | 4.0E-9 |
| 5 | g17780.t1 | Pfam | PF01833 | IPT/TIG domain | 1216 | 1293 | 2.1E-5 |
| 6 | g17780.t1 | Pfam | PF08337 | Plexin cytoplasmic RasGAP domain | 1388 | 1976 | 6.0E-238 |
| 31 | g17780.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 37 | - |
| 32 | g17780.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 15 | - |
| 33 | g17780.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 16 | 27 | - |
| 35 | g17780.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 28 | 37 | - |
| 30 | g17780.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 38 | 1314 | - |
| 34 | g17780.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1315 | 1337 | - |
| 29 | g17780.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1338 | 2008 | - |
| 51 | g17780.t1 | ProSiteProfiles | PS51004 | Sema domain profile. | 39 | 509 | 50.75 |
| 43 | g17780.t1 | SMART | SM00630 | sema | 66 | 493 | 5.2E-88 |
| 48 | g17780.t1 | SMART | SM00423 | psinew7 | 511 | 563 | 4.2E-11 |
| 50 | g17780.t1 | SMART | SM00423 | psinew7 | 660 | 707 | 2.1E-5 |
| 49 | g17780.t1 | SMART | SM00423 | psinew7 | 805 | 852 | 0.022 |
| 47 | g17780.t1 | SMART | SM00429 | iptmega2 | 853 | 941 | 1.9E-17 |
| 45 | g17780.t1 | SMART | SM00429 | iptmega2 | 942 | 1023 | 2.3 |
| 46 | g17780.t1 | SMART | SM00429 | iptmega2 | 1063 | 1155 | 3.4E-12 |
| 44 | g17780.t1 | SMART | SM00429 | iptmega2 | 1208 | 1305 | 7.4 |
| 20 | g17780.t1 | SUPERFAMILY | SSF101912 | Sema domain | 58 | 509 | 2.62E-115 |
| 15 | g17780.t1 | SUPERFAMILY | SSF103575 | Plexin repeat | 508 | 554 | 1.07E-8 |
| 19 | g17780.t1 | SUPERFAMILY | SSF81296 | E set domains | 851 | 941 | 5.46E-14 |
| 17 | g17780.t1 | SUPERFAMILY | SSF81296 | E set domains | 945 | 1007 | 8.27E-8 |
| 18 | g17780.t1 | SUPERFAMILY | SSF81296 | E set domains | 1060 | 1130 | 7.38E-13 |
| 16 | g17780.t1 | SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 1432 | 1941 | 3.4E-40 |
| 21 | g17780.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 40 | - |
| 42 | g17780.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 26 | - |
| 41 | g17780.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1315 | 1337 | - |
| 40 | g17780.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1462 | 1480 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0017154 | semaphorin receptor activity | MF |
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
| GO:0071526 | semaphorin-plexin signaling pathway | BP |
KEGG
Orthology
- This transcript has been annotated with K06821 (plexin B)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
