General information for g17826.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Polypeptide N-acetylgalactosaminyltransferase 1.
Parent gene
- The parent gene g17826 is located on HiC_scaffold_385: 10175..10858 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_385 | g17826 | g17826.t1 | isoform | g17826.t1 | 10175 | 10858 |
| HiC_scaffold_385 | g17826 | g17826.t1 | exon | g17826.t1.exon1 | 10175 | 10436 |
| HiC_scaffold_385 | g17826 | g17826.t1 | cds | g17826.t1.CDS1 | 10175 | 10436 |
| HiC_scaffold_385 | g17826 | g17826.t1 | exon | g17826.t1.exon2 | 10525 | 10643 |
| HiC_scaffold_385 | g17826 | g17826.t1 | cds | g17826.t1.CDS2 | 10525 | 10643 |
| HiC_scaffold_385 | g17826 | g17826.t1 | exon | g17826.t1.exon3 | 10697 | 10858 |
| HiC_scaffold_385 | g17826 | g17826.t1 | cds | g17826.t1.CDS3 | 10697 | 10858 |
| HiC_scaffold_385 | g17826 | g17826.t1 | TSS | g17826.t1 | NA | NA |
| HiC_scaffold_385 | g17826 | g17826.t1 | TTS | g17826.t1 | NA | NA |
Sequences
>g17826.t1 Gene=g17826 Length=543
ATGAATTTTGAAGAAAGACCAAAAGCTGATATTTTACAAATGTCACCCAAAAGCTATCCA
AAATTTGATGAATTAGAAAATAATTTGAAGCATTTCTTAAAGAATTCTATAAAGAAAGAA
GAAAATTTTCAATCTGTCATGAAAAAACCTATGAAAAAGTTTAGAAGTGAAAAAAATTAT
CGATTCAAAGAAACTTTTGTTTGGCCAAAAGTTCCTGATGAAATTGTAACATTGCATCAC
TTTTTGAATTTAACAAATCCAGGTCACATGGGAAAGCCAGTAATTTTACCATCAATTTTA
CCACCAGAAATGCAAGAAAAAATAAACAAAAGTTGGGAAATTTATTCAATCAATGAATTT
GTCTCAAAATTAATTCCACTTGATCGAGATTTGCCAGATATAAGACCAGAATATTGTAGA
ACAGTGACTTATGCTGATGAACTGCCAAAAACTTCAGTTATTATGGTCTTTCATAATGAA
CCACTTTCAATGATTTTAAGATCTGTTTTGCTGTTTTTAAAAGAACTTCTGAAAGAATTT
TGA
>g17826.t1 Gene=g17826 Length=180
MNFEERPKADILQMSPKSYPKFDELENNLKHFLKNSIKKEENFQSVMKKPMKKFRSEKNY
RFKETFVWPKVPDEIVTLHHFLNLTNPGHMGKPVILPSILPPEMQEKINKSWEIYSINEF
VSKLIPLDRDLPDIRPEYCRTVTYADELPKTSVIMVFHNEPLSMILRSVLLFLKELLKEF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g17826.t1 | Coils | Coil | Coil | 22 | 42 | - |
| 3 | g17826.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 73 | 180 | 7.6E-22 |
| 1 | g17826.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 58 | 170 | 8.8E-17 |
| 2 | g17826.t1 | PANTHER | PTHR11675:SF101 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 1 | 58 | 170 | 8.8E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed