General information for g1795.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1795 is located on chr_3: 13058912..13066148 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1795 | g1795.t5 | isoform | g1795.t5 | 13058912 | 13064351 |
| chr_3 | g1795 | g1795.t5 | exon | g1795.t5.exon1 | 13058912 | 13059421 |
| chr_3 | g1795 | g1795.t5 | cds | g1795.t5.CDS1 | 13059097 | 13059421 |
| chr_3 | g1795 | g1795.t5 | exon | g1795.t5.exon2 | 13064161 | 13064277 |
| chr_3 | g1795 | g1795.t5 | cds | g1795.t5.CDS2 | 13064161 | 13064165 |
| chr_3 | g1795 | g1795.t5 | exon | g1795.t5.exon3 | 13064344 | 13064351 |
| chr_3 | g1795 | g1795.t5 | TSS | g1795.t5 | NA | NA |
| chr_3 | g1795 | g1795.t5 | TTS | g1795.t5 | NA | NA |
Sequences
>g1795.t5 Gene=g1795 Length=635
CGTAAGCTTCGAATCAATTAGTTTTGTACTAATGTTTTTCTATTTAGAATATTAATTTGT
TTTATTACTTTTTAAAGCCTCCACCTCCGCCTATTTCAAATATGGTAAGACAATTAGTCA
AAATATTGCTTCTTTATGAAATACAAATTAATTTAACTCTTTTTTAATAGCCGCCTCCGC
CTCCAATGATGATGAAAGAATCAACCGGAGCACCAAATTCATTACCAGTCGTTTCTGATG
CAAGAAGCGCTCTTATGGATAGTATAAGAAAGGGAGCACAATTGAAAAAAGTTGAAGTAT
CATCGACAACAACATCAAATAGTTCTGGTGATTCGCGTGGAGATTTAATGTCAGAAATTC
GTGGCGGCTTTGAACTCAGACCAGTAAGCGATCGACCAAGTCAACCGAATAGATCGAGTG
ATGGAGCTGGAACCGATGCATTAGCTGATGCATTAAGAAGAGCTTTAGAACAAAGGAAGC
AAGCATTCGGTGGTGATTCTTCAAGTGAATCCTAAATCCTTGTAAATCTCTTGCCAATGT
GCTTAAATCTAAATCATGAATAATTATTAAGTAACCTCCTGTGGTGCATATCACTAATTT
CGTGCAATCTGGAGCTAAGCGACATCGTACCCAGG
>g1795.t5 Gene=g1795 Length=109
MMMKESTGAPNSLPVVSDARSALMDSIRKGAQLKKVEVSSTTTSNSSGDSRGDLMSEIRG
GFELRPVSDRPSQPNRSSDGAGTDALADALRRALEQRKQAFGGDSSSES
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1795.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 85 | - |
| 5 | g1795.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 52 | - |
| 2 | g1795.t5 | Pfam | PF02205 | WH2 motif | 17 | 39 | 5.7E-9 |
| 1 | g1795.t5 | Pfam | PF02205 | WH2 motif | 48 | 67 | 1.6E-4 |
| 8 | g1795.t5 | ProSiteProfiles | PS51082 | WH2 domain profile. | 19 | 36 | 10.766 |
| 7 | g1795.t5 | ProSiteProfiles | PS51082 | WH2 domain profile. | 50 | 67 | 9.505 |
| 4 | g1795.t5 | SMART | SM00246 | wh2_8 | 19 | 36 | 6.3E-5 |
| 3 | g1795.t5 | SMART | SM00246 | wh2_8 | 50 | 67 | 0.004 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003779 | actin binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
