General information for g1810.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1810 is located on chr_3: 13137940..13139252 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1810 | g1810.t4 | TSS | g1810.t4 | 13137381 | 13137381 |
| chr_3 | g1810 | g1810.t4 | isoform | g1810.t4 | 13137483 | 13138484 |
| chr_3 | g1810 | g1810.t4 | exon | g1810.t4.exon1 | 13137483 | 13137501 |
| chr_3 | g1810 | g1810.t4 | cds | g1810.t4.CDS1 | 13137483 | 13137501 |
| chr_3 | g1810 | g1810.t4 | exon | g1810.t4.exon2 | 13137572 | 13138484 |
| chr_3 | g1810 | g1810.t4 | cds | g1810.t4.CDS2 | 13137572 | 13137924 |
| chr_3 | g1810 | g1810.t4 | TTS | g1810.t4 | 13138982 | 13138982 |
Sequences
>g1810.t4 Gene=g1810 Length=932
ATGGACAATAACCAAGCAGGATCTAGAAAATTGTTCTTAAAACCAGCTAAATCGGGCTTA
CAAAAAACAGAACAGCAACAACAACAAACAAACGGAAGCAGTTCATCTGAAAATGGAAAT
ATATTCAATCTGAGTAACAATCCTTTCCTTAAATGTGAGGAAGATATAGAAACTAAAAAT
AATGAAGAAAAAGTTTCTAAAGAAACTGATAATGCTGATATTAAAGCAAAAGATTTGTTT
AAGCCAGTTAGTACAAATCTCTTCAAAAATGCCACAACATTATCAGAAAATTCCAATTTT
GTGTTTGGTCAAAATCTCCATGAAAGAGTAGTTATTGTAAGTTTTAAGCTTTATTTTAGT
GCATATGCTTAAAGGTTTATTTAAATTTATTAGGATAAAACATCAACCACTGCAGCATCT
ACAGAAAGTGAAAACAAAAGCAATGATGAAAAAGATGAAAAGACAAACAAACTACTTTTT
TCAAGTGCCCTTTCGCAACAGCCGACAGAAAAAACAGAGCGAAGGAATAATGATGATAAT
GCCGAGAACAATACACAGCCAATATCGACGAAAAAAACTGATGATCAGTCTGAAGAAAAT
TTAAGTCTCATTGAAGCGGCTAGGAGATATGAAGAAATTAAAAGTGCACAGAAAAGAAAA
TTTGAAGAGGTAGAAGTGATAACTGGTGAGGAAGATGACAAAAATATTTTAGAAATGAAC
TGTAGACTGTTTACATTCGATAAAAATAATTGGGAAGAAAGAGGTCGTGGAACTCTACGT
CTGAATGATTGCAAAAATAGTGCTCGTGTTGTATTTCGTGCGTCAGGTAGTTTACGTTTA
TTACTTAATACAAAAGTATGGAAAGACCAGTTATGCGAGCTGGCCAATTCAAAGAGTTTG
AAGCTTACGGCTATTGATTCTAATGGACTAGT
>g1810.t4 Gene=g1810 Length=123
MDNNQAGSRKLFLKPAKSGLQKTEQQQQQTNGSSSSENGNIFNLSNNPFLKCEEDIETKN
NEEKVSKETDNADIKAKDLFKPVSTNLFKNATTLSENSNFVFGQNLHERVVIVSFKLYFS
AYA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1810.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - |
| 1 | g1810.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 41 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
