General information for g1813.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1813 is located on chr_3: 13145054..13145925 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1813 | g1813.t1 | isoform | g1813.t1 | 13141870 | 13145925 |
| chr_3 | g1813 | g1813.t1 | exon | g1813.t1.exon1 | 13141870 | 13142586 |
| chr_3 | g1813 | g1813.t1 | cds | g1813.t1.CDS1 | 13141870 | 13142586 |
| chr_3 | g1813 | g1813.t1 | TTS | g1813.t1 | 13141892 | 13141892 |
| chr_3 | g1813 | g1813.t1 | exon | g1813.t1.exon2 | 13142652 | 13142937 |
| chr_3 | g1813 | g1813.t1 | cds | g1813.t1.CDS2 | 13142652 | 13142937 |
| chr_3 | g1813 | g1813.t1 | exon | g1813.t1.exon3 | 13143311 | 13144987 |
| chr_3 | g1813 | g1813.t1 | cds | g1813.t1.CDS3 | 13143311 | 13144987 |
| chr_3 | g1813 | g1813.t1 | exon | g1813.t1.exon4 | 13145054 | 13145486 |
| chr_3 | g1813 | g1813.t1 | cds | g1813.t1.CDS4 | 13145054 | 13145486 |
| chr_3 | g1813 | g1813.t1 | exon | g1813.t1.exon5 | 13145724 | 13145925 |
| chr_3 | g1813 | g1813.t1 | cds | g1813.t1.CDS5 | 13145724 | 13145925 |
| chr_3 | g1813 | g1813.t1 | TSS | g1813.t1 | 13146086 | 13146086 |
Sequences
>g1813.t1 Gene=g1813 Length=3315
ATGAACAATGATGATGAAGTTCTAATGGATAATTTTAATCAAGAAGACTCGACAACTGAA
AGTACGTGTGGCAGCGGTTTGGGTTTATCGAAAAATGAAGTTATAAAATTGCTTTACAAT
CAAGACAGTGAAATTGAATTAATTGCTCCGGAAAAGTTCAAATCAGCTATTTGGGAACGC
TTTAGAATTATATTTTACAAAGGTGCTAGATTGAATTACGTACAGTGCATAGGTTGTTCG
CTAGTGCTAGTTTATAAATCACGAACAGGCACTGCGTCGCTTTTACGCCATCGATGTCAA
CGATTTCCCATTTCAGTTTATGATTTGAAACTTGAAAATCATCGTGCAATATTTGCTGCC
GCTGGACAATTGAATTTATTAAATGAAATGGCATCGACAAATAATGAAAATATTGAGTTA
AAACAAGAAATGTTAACAGATGAAGAAGAAAGCGAAGAACAAGAACAAGATCATGACGAC
GATAGTCAATTTATCGCGGATCAAACTGATAAAGGATTGCTTGAATCGTTTTCGCTACTA
GAAAAAACTTTTATTACTGGTGACGAATTATTATTGTCACGTGAAGAAATTGAACACGCA
AAGCGAAACAACGATCCAGATTTATTTTTTGAAAGACCTCGAAATCATCGACATAGCTCA
ACATGGGATCGATTTGAAATTGTTTATTATAGAAATGTACGACAAAATTTTGCAAAATGT
TTTTCATGTAATTCAATTGTGTCTTATAAGAAGACTACAGGCACAGCAAGTTTGATAAGA
CATAAATGTAAAAGCGCAAATCAACAACAACAACAGCATCAATCAAATAATGTTAAAATT
GAAAATGTGACTGGATTACTTCTTGCTTCCGCATCTGCATCTGCATCGACAATAACATCT
CAACCGCCTACTTTAACACCAGCACCACCAGTGTTTCAGCATAAACAATCAACTTCTTCA
GCATCAGTTTCTTCATCCACAAACAGCTTAACAAAAAATGATCAAAAAATTTTAGCTATT
GCTCATTCAAAATCCGACGTTATGAACTATGCAGAGAAAAATCTTGTTGACGCACAAATT
CAATGGCTCTGTCAATCTTTGATTTCAACTGAAATTTTAAGTGAACCTTGTTACTTGGAT
TTCTTGCAAAATCTCATTCATTATGGAGCTGATCATGGCAAGCAGTCTGTGATAAAATTT
ATCAATCGTGAGACTATTTCACAGGAAATCATACCGAAAAAATGTGCAGCACTTCAAAAT
GAATTGATGAATGAACTAAGAAATACTGAATTTTCAATTTCATATCTGTGTTGGGAAGAT
TGTCACAATGAAAAATATATAACAGTTTTTGCATATTATTTTACAAATGCATTCGTTTAC
AAGCATAAAGTTTTGGGTACTCAACGTAACTCCTCGGGTCAAAATAATGTGAACAATATT
ATAAAAATTGTAAAAGATATAGTGAAGCCTTATAAAAGTGCAAACGATGAGCCGATAAAA
TGTGTTGCTGAAAACAGTTGTTCTGATTTTACAATTTATCCTTGCATCATTAGTCGCATA
TCAAAAGTTATAATAGCAGCGATCAATGCAAATGATGACAATAAAATTTTTTTCAAAAAA
ATTTATCAAAAAGCTCATGAACTTATGTGTGAAACTGTTAAATATAATTTTGAAGATAGC
AATGATGAACATAAAATGAAAATATTTTATTCTTTGCATCAATTTATAAAGAATAATGAA
ATTCAGAATAATGCAATCACTAAGAAATTTTCAAATCTTCTCGGTATACTTTTTGAAGCG
ATTGCAAGCCTTACAGAAATATCAGATGATGGTGTACGCTGTGTAACAGCAAATAGAGTT
TATTTGTGGCACAAAAAATTTCTCAAGTACTATTCTGAATACACATGTGATGACAAAATT
GTGAACAATATTGGAGCCATGATTCTCAAATTAATCAAAGAAAATTTCACTAATAGTATA
CATGAGCTCTATCAAATTACAGTATTTCTTAATCCAAATTTTAAAAGCCTCAAATTTTTA
AGCTCAAGTGAACGCAATGATTTGTTAGAAATTATAAGGAAAAATTTGAAAAAGTTGATG
AGTGAAGACAGTACTATACAACCACCTTTGACAAAGAAACAAAAGACAAGTCAAAATCAA
ACACATCTCAATGATACATTTTTTGAATTTATGGATTTATCTATGGAGAATATTGATGAT
CAAGTAAATTCAGAAATACAACGTTATATGGGCTTTAAATTAGAAAGCTTAGTTGACATT
ATCGACTTTTGGGCAACAAATGATTCTTTTCCGAGCCGTGATCGTTTTCTAGAATCAAGT
CAACAAATTGAGGCATTAGTTGAGAGATTTTCACGTGAGGCAAATTTGTCTGATAGCCCT
CCTGCTGCTGGCATTGTTGGAAAAATACCACTCGCTTACGGCAAACCTTCTGAAATAAAA
GTATTTGGCATTTTGTATCTACGACTGCTTGCATCGACTTTTTCATGCGGTGGAACTGGT
CTTAAGACACTATTTTTAAGAATATTGGCACTTCCAACATTTTTGAGCTTATTATGGATT
TTTTATAACAACATTGGGGATGACTCACATGGTTTCTTCAGTAAAAATAGCTTAGTACTT
AATGTTCTTGGATTTTCTTATGGTGTTGGAATTTTAACAACAGTATCGCTATTTCCAATT
TGGAGGAAAAGATTTGTTCAAGAGCAATTAGAGGGATTATATTCCGGAGTTACATTGCTT
TTATCATATAACTGTTATTCCATACCATTTTCATTTATTAGCTCTGCACTCGCTGCAAGT
GTGATTTACCCTTTGGTACTTGATCCATCAAATTTGGAAAATGGTTATCCTTTTATCTAC
ATCTTCGTTTCTATCTGGACTAGTTACATGCTAAGTGAGCAGCTTTCGATTTTCTTCCTC
TTTTTCATTAAATCACCTATTAATGCTGTTGTGGCAGTATCATACATAATCACTCTTTCT
CTTGTTCTTGCATCTGGGACGGTTAGAAGTTGGAAAGGACTAGTACCAATTTTACAAGAT
AATGCAAAAGCAACACATTCCCGTTATGCATCAGAATTGCTTCATAGTGCAATCTTTTTG
TCTCGTCGAATGCATTGTGTCCCGAAAAATAATATAACATGTCCGAGTCCTAAAGAATTT
TTGCTTGAACGACTCAACTTCCAAAATGTAACTAATGAATTCATTGATATATCAATTGCA
TTTGCTTTTGCTATCGGGTTAGCATTCTTCAACATGATTGTATATTTATTCCCAAAAAAA
ACAAAAAATACTTAA
>g1813.t1 Gene=g1813 Length=1104
MNNDDEVLMDNFNQEDSTTESTCGSGLGLSKNEVIKLLYNQDSEIELIAPEKFKSAIWER
FRIIFYKGARLNYVQCIGCSLVLVYKSRTGTASLLRHRCQRFPISVYDLKLENHRAIFAA
AGQLNLLNEMASTNNENIELKQEMLTDEEESEEQEQDHDDDSQFIADQTDKGLLESFSLL
EKTFITGDELLLSREEIEHAKRNNDPDLFFERPRNHRHSSTWDRFEIVYYRNVRQNFAKC
FSCNSIVSYKKTTGTASLIRHKCKSANQQQQQHQSNNVKIENVTGLLLASASASASTITS
QPPTLTPAPPVFQHKQSTSSASVSSSTNSLTKNDQKILAIAHSKSDVMNYAEKNLVDAQI
QWLCQSLISTEILSEPCYLDFLQNLIHYGADHGKQSVIKFINRETISQEIIPKKCAALQN
ELMNELRNTEFSISYLCWEDCHNEKYITVFAYYFTNAFVYKHKVLGTQRNSSGQNNVNNI
IKIVKDIVKPYKSANDEPIKCVAENSCSDFTIYPCIISRISKVIIAAINANDDNKIFFKK
IYQKAHELMCETVKYNFEDSNDEHKMKIFYSLHQFIKNNEIQNNAITKKFSNLLGILFEA
IASLTEISDDGVRCVTANRVYLWHKKFLKYYSEYTCDDKIVNNIGAMILKLIKENFTNSI
HELYQITVFLNPNFKSLKFLSSSERNDLLEIIRKNLKKLMSEDSTIQPPLTKKQKTSQNQ
THLNDTFFEFMDLSMENIDDQVNSEIQRYMGFKLESLVDIIDFWATNDSFPSRDRFLESS
QQIEALVERFSREANLSDSPPAAGIVGKIPLAYGKPSEIKVFGILYLRLLASTFSCGGTG
LKTLFLRILALPTFLSLLWIFYNNIGDDSHGFFSKNSLVLNVLGFSYGVGILTTVSLFPI
WRKRFVQEQLEGLYSGVTLLLSYNCYSIPFSFISSALAASVIYPLVLDPSNLENGYPFIY
IFVSIWTSYMLSEQLSIFFLFFIKSPINAVVAVSYIITLSLVLASGTVRSWKGLVPILQD
NAKATHSRYASELLHSAIFLSRRMHCVPKNNITCPSPKEFLLERLNFQNVTNEFIDISIA
FAFAIGLAFFNMIVYLFPKKTKNT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 29 | g1813.t1 | CDD | cd06261 | TM_PBP2 | 821 | 1002 | 0.00727537 |
| 13 | g1813.t1 | Coils | Coil | Coil | 123 | 157 | - |
| 1 | g1813.t1 | PANTHER | PTHR48041 | ABC TRANSPORTER G FAMILY MEMBER 28 | 808 | 1052 | 1.2E-13 |
| 2 | g1813.t1 | PANTHER | PTHR48041:SF47 | ATP-BINDING CASSETTE SUB-FAMILY G MEMBER 5 | 808 | 1052 | 1.2E-13 |
| 20 | g1813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 818 | - |
| 25 | g1813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 819 | 837 | - |
| 17 | g1813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 838 | 843 | - |
| 23 | g1813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 844 | 862 | - |
| 19 | g1813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 863 | 881 | - |
| 24 | g1813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 882 | 901 | - |
| 15 | g1813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 902 | 912 | - |
| 27 | g1813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 913 | 946 | - |
| 18 | g1813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 947 | 957 | - |
| 22 | g1813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 958 | 982 | - |
| 14 | g1813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 983 | 988 | - |
| 26 | g1813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 989 | 1008 | - |
| 21 | g1813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1009 | 1073 | - |
| 28 | g1813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1074 | 1097 | - |
| 16 | g1813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1098 | 1104 | - |
| 11 | g1813.t1 | SMART | SM00614 | bed5 | 52 | 101 | 0.0042 |
| 12 | g1813.t1 | SMART | SM00614 | bed5 | 216 | 266 | 0.62 |
| 10 | g1813.t1 | SUPERFAMILY | SSF53098 | Ribonuclease H-like | 431 | 768 | 2.43E-12 |
| 3 | g1813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 821 | 838 | - |
| 9 | g1813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 843 | 862 | - |
| 6 | g1813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 877 | 899 | - |
| 5 | g1813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 920 | 942 | - |
| 7 | g1813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 957 | 979 | - |
| 4 | g1813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 986 | 1008 | - |
| 8 | g1813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1075 | 1097 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
