Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ATP-binding cassette sub-family G member 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1814 g1814.t1 isoform g1814.t1 13147165 13148357
chr_3 g1814 g1814.t1 exon g1814.t1.exon1 13147165 13147215
chr_3 g1814 g1814.t1 cds g1814.t1.CDS1 13147165 13147215
chr_3 g1814 g1814.t1 exon g1814.t1.exon2 13147273 13147369
chr_3 g1814 g1814.t1 cds g1814.t1.CDS2 13147273 13147369
chr_3 g1814 g1814.t1 exon g1814.t1.exon3 13147427 13147856
chr_3 g1814 g1814.t1 cds g1814.t1.CDS3 13147427 13147856
chr_3 g1814 g1814.t1 exon g1814.t1.exon4 13147918 13148080
chr_3 g1814 g1814.t1 cds g1814.t1.CDS4 13147918 13148080
chr_3 g1814 g1814.t1 exon g1814.t1.exon5 13148304 13148357
chr_3 g1814 g1814.t1 cds g1814.t1.CDS5 13148304 13148357
chr_3 g1814 g1814.t1 TSS g1814.t1 13148567 13148567
chr_3 g1814 g1814.t1 TTS g1814.t1 NA NA

Sequences

>g1814.t1 Gene=g1814 Length=795
ATGATCGGAAGTGATTATGTTTTGGAAGCATTAAATATCTATCATACAACTGATGTCGGT
AGCAATGGTTGTTTTGGTGGAGATGGAACTTCTGCGTTAGTTTTAAAAGGAGTTAATTTG
ACACTTCACTCTGGTGAAGTTATGGCAATTTTGGGATCAAAAGGAAGTGGCAAGCGTGCA
TTGTTAGATGTTATTGCAAGACGAGCTGATGGTCGCGGTCGTTTTTTATTAAATGGTGTT
CCACTCACAAAGAATCTTTTTCAACAACGTTGTGGATATGTCACACATCAATGTGACTTT
ATACCCGGCTTAACAGTCTCTCAAACTCTTCATTATACACCAACAATTTTGAGTGGATAT
TTGAAAAGTTCAAAAGTGCGTCAAGTCTTAGCTGATTTGGCATTATCACAAGTTGCGAAT
AAAAAAGTCGAAAACCTAAATATCAGCGAACGACGTCGTTTGTCAATTGGCATTCAACTT
GTTCGTGATCCTGTTATGCTATTACTTGATGAACCAACACAAAACCTCGATCCATTAGCT
GCATACTTGCTCATTTCTATACTTTCAAATTCTGCAAAAAAGACGGGATGTGGTATTTTA
TTAAGCATGGAAAAACCACGATCGGACGTGTTTCCGTTTCTTGATCGTGCATTATTTTTG
TGTTTGGGAGGTGCAGTTTATAGTGGTGGAACAAGAGCAATGTTGGAATATTTTCATAAT
ATAGGTTTTCCATGTCCTCAACTTGAAAATCCTCTTATGTATTATCTATGTCTATCAACA
GTTGACAGAAGGTGA

>g1814.t1 Gene=g1814 Length=264
MIGSDYVLEALNIYHTTDVGSNGCFGGDGTSALVLKGVNLTLHSGEVMAILGSKGSGKRA
LLDVIARRADGRGRFLLNGVPLTKNLFQQRCGYVTHQCDFIPGLTVSQTLHYTPTILSGY
LKSSKVRQVLADLALSQVANKKVENLNISERRRLSIGIQLVRDPVMLLLDEPTQNLDPLA
AYLLISILSNSAKKTGCGILLSMEKPRSDVFPFLDRALFLCLGGAVYSGGTRAMLEYFHN
IGFPCPQLENPLMYYLCLSTVDRR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g1814.t1 Gene3D G3DSA:3.40.50.300 - 21 240 0.000
2 g1814.t1 PANTHER PTHR48041 ABC TRANSPORTER G FAMILY MEMBER 28 23 258 0.000
3 g1814.t1 PANTHER PTHR48041:SF47 ATP-BINDING CASSETTE SUB-FAMILY G MEMBER 5 23 258 0.000
1 g1814.t1 Pfam PF00005 ABC transporter 35 174 0.000
6 g1814.t1 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 8 247 15.573
4 g1814.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 32 246 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed