General information for g1815.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ABC transporter G family member 17.
Parent gene
- The parent gene g1815 is located on chr_3: 13160429..13161658 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1815 | g1815.t1 | isoform | g1815.t1 | 13156064 | 13161658 |
| chr_3 | g1815 | g1815.t1 | exon | g1815.t1.exon1 | 13156064 | 13156179 |
| chr_3 | g1815 | g1815.t1 | cds | g1815.t1.CDS1 | 13156064 | 13156179 |
| chr_3 | g1815 | g1815.t1 | exon | g1815.t1.exon2 | 13157008 | 13157181 |
| chr_3 | g1815 | g1815.t1 | cds | g1815.t1.CDS2 | 13157008 | 13157181 |
| chr_3 | g1815 | g1815.t1 | exon | g1815.t1.exon3 | 13157238 | 13158081 |
| chr_3 | g1815 | g1815.t1 | cds | g1815.t1.CDS3 | 13157238 | 13158081 |
| chr_3 | g1815 | g1815.t1 | exon | g1815.t1.exon4 | 13158146 | 13158488 |
| chr_3 | g1815 | g1815.t1 | cds | g1815.t1.CDS4 | 13158146 | 13158488 |
| chr_3 | g1815 | g1815.t1 | exon | g1815.t1.exon5 | 13158555 | 13158577 |
| chr_3 | g1815 | g1815.t1 | cds | g1815.t1.CDS5 | 13158555 | 13158577 |
| chr_3 | g1815 | g1815.t1 | exon | g1815.t1.exon6 | 13158643 | 13158661 |
| chr_3 | g1815 | g1815.t1 | cds | g1815.t1.CDS6 | 13158643 | 13158661 |
| chr_3 | g1815 | g1815.t1 | exon | g1815.t1.exon7 | 13160429 | 13161019 |
| chr_3 | g1815 | g1815.t1 | cds | g1815.t1.CDS7 | 13160429 | 13161019 |
| chr_3 | g1815 | g1815.t1 | exon | g1815.t1.exon8 | 13161077 | 13161363 |
| chr_3 | g1815 | g1815.t1 | cds | g1815.t1.CDS8 | 13161077 | 13161363 |
| chr_3 | g1815 | g1815.t1 | exon | g1815.t1.exon9 | 13161431 | 13161658 |
| chr_3 | g1815 | g1815.t1 | cds | g1815.t1.CDS9 | 13161431 | 13161658 |
| chr_3 | g1815 | g1815.t1 | TTS | g1815.t1 | 13161660 | 13161660 |
| chr_3 | g1815 | g1815.t1 | TSS | g1815.t1 | NA | NA |
Sequences
>g1815.t1 Gene=g1815 Length=2625
ATGGAAATGAACACATATCGCGAAGAAAGGCGATACTCAGTGCCACAAGGAGCTCATATG
CCTCAAATGCAATTGCCACCTGCTAGTGAAGATTTGCATGCATGGTCAATCTATAGGCAA
AATCTTAATTCAGATTTTACTGACTCGGCGTTAGGTAGTAGTGACAAAAGTCCATTGCCA
TACGGGAATTTTCAATTGCGTGATACAACAGTACATTCAATTCTTAATCATCCACGATAT
GGACCAAAGTCACCATTGGGTTCAAATATGTATACATATTTGAAATTTGGTTTACCAAGA
GTTTTTCCACCAAATGGCTCACAACGATCACATCGAAATGGAGCTCATCAAAGAAGTCGT
GGTAGAATAAATCGAGGTTTTAATAGAGATAGTGGCGGTGTGTCATCTGGTTATGATAGT
AGTGATAATGAAACGACAAGAGGACGTATGCCACCTAATTTAAGAAAATATAGGAGTGAA
TCTGATTTTAGAACAATGAATATGATGCAACAACAACATCCCTCCTCACGTCCTAGTTCA
CGAATGCACAATAATATTCCAGTAACGGCATTAAAACAACCAAATAGTAGAGCAAGCATA
GCTGGAACTCATATAAATCATTACAATGGAAATAATCATACTCACTCACGATATAACCAC
AATCGTTCGCATAGTGAAGCAGATTTACTTGGAGGTGAAATGGTTTATGAATATGACTCA
AGAGTTTACGGTGAAACGAGAGATCCCCGAATGAGAATGGAACAATATTCGGGAATTTCC
AGACGACATTCATCTACATTAATTTATCCAAATATTCAAATTCATTGCCTTGATGTCGAC
GAAATACGTGGTGCATCACTTCAAGCCAAAGCTGGTGATTTATTTGCAATCATGGCGACA
TCAAATAGAGAAGGAACGGCTTTAATAGAAACAATTGCTGGTTTACGAGAGAGATTAGGT
GGTGAAATCCTAATTAATGGACAGCAAGTGTCTCGAAGCATGCTGAAACAACTTTGTGGA
TATGTACCTGCTCTAGAAATTGCCTCACTCGATCCTCGAATGAGCGTTCAAAATACATTG
ACTTATCACGCAGCACTTAAAGGTCCACTTGATAAAAGTGACATAAAAGAAAGAATTGAC
ATTTTAGTAGAAGATCTTGGTCTAACAGCAGTTCGTTCATCCTGTATATCCTCCCTCACA
CATTCTGAAAAGCAACGATTAAATGTCGCTTGTCAACTTCTTACTCAATGTTCTGTATTA
GTTCTTGATCAAACAACCAATAACATGGATATTTTTGACACATTTTTTTTAGTTGAATAT
TTACGACAATGGTGTAGCTCAAGAATTTGCATTATGACACTTCAACCACCAACTTTTGAG
ATATTATCCATGTGTTCGGGTGTTTTGTTATTATCGGGCGGAAGAACTATTTTTAGTGGT
AATCGTGCTGATCTTCCAAGACACATGGGGCAATTAGGTTATCCATCGCCACCATATAAA
AATCCAGCTGATTATTATTTGGATTTAGTTACATTAGATGATCTTTCGGCTGCTGCACTT
TTAGAATCATCAGCTCGAATTGAATCACTTGCAAATGCTTGGGATCGAATGAACTCCGAG
CCTCCACTTGCTGCTCCTCTCACGAGTCTCCCCGATCCTACAAAATCGGCTGGTGTGTTT
AGACAAATTGGAACGTTATGCAAACGATATATTTCTTATAAACAGCCAGGATCATTATTA
ACTTGGATAAGTAGATTAATTATTGCAGCAGTTTTATCACTTTGTCTAGGTGGTATTTTT
TGGGACATTCCATCAACAGATCCATTATTAACTTATAATGATAGACTTGGTTATCATCAT
ACAGTAATGACAATCACTTTATGGCCATTGTTACTGTTAATTATTAGAGATATTCAAGAT
GATAGACGACAAGCAGAGAAAGATATTCATTTGCAATTATATGGTAGAACTGTGTATATT
TTTGTGCAATCAATTCTCAGTGTTATTCCAAGTTTGTGCATATGGATAGCTTATCTACTT
CCTGCACATACTATGGCAGGCCTTTATGTTTACACTGCAAGTAATGATGCTGGAATTTAT
TTGTATATGGGCTATATGATTTTATATTTAATGACTATGCAGACACTTGCATTGTTTGTA
TCACATTTCTTAGCGCCACGTAAAATAGTTGCTTCACTTTTTACGTTATTAATAATGCTC
ATTGTTAATGTATCAGTTGGTGGATATTTTATTCATCCTTCGAATATACCTGAATTTATT
AAATGGCTTGAATATGCATCTCCACAAAAATGGACACTTCCTCTCTTTGCAAAAGATGAA
TATAGTGATGAGACAATTGCTAATTCAGGAGCAATGCAGTTGTGTCGCAATAAACATGTT
CAACGGCAGGAAATTATCGTTCAACAGCCATGCAAAATTAATGGTTCAGAGATTTTATTA
GATTTTAGTCTTCAGCCTCATCAACATGTACTAGATTCTTCAGATATTTATATTTCAACA
TTAATTGGCATGCTCATCGCATGCATTGGACTTTTCCTTTTAACAGCTATTTCATTCATT
GCCAATATAAGTCGAATATTTAGAAATAAAAATAAGAGACGATAA
>g1815.t1 Gene=g1815 Length=874
MEMNTYREERRYSVPQGAHMPQMQLPPASEDLHAWSIYRQNLNSDFTDSALGSSDKSPLP
YGNFQLRDTTVHSILNHPRYGPKSPLGSNMYTYLKFGLPRVFPPNGSQRSHRNGAHQRSR
GRINRGFNRDSGGVSSGYDSSDNETTRGRMPPNLRKYRSESDFRTMNMMQQQHPSSRPSS
RMHNNIPVTALKQPNSRASIAGTHINHYNGNNHTHSRYNHNRSHSEADLLGGEMVYEYDS
RVYGETRDPRMRMEQYSGISRRHSSTLIYPNIQIHCLDVDEIRGASLQAKAGDLFAIMAT
SNREGTALIETIAGLRERLGGEILINGQQVSRSMLKQLCGYVPALEIASLDPRMSVQNTL
TYHAALKGPLDKSDIKERIDILVEDLGLTAVRSSCISSLTHSEKQRLNVACQLLTQCSVL
VLDQTTNNMDIFDTFFLVEYLRQWCSSRICIMTLQPPTFEILSMCSGVLLLSGGRTIFSG
NRADLPRHMGQLGYPSPPYKNPADYYLDLVTLDDLSAAALLESSARIESLANAWDRMNSE
PPLAAPLTSLPDPTKSAGVFRQIGTLCKRYISYKQPGSLLTWISRLIIAAVLSLCLGGIF
WDIPSTDPLLTYNDRLGYHHTVMTITLWPLLLLIIRDIQDDRRQAEKDIHLQLYGRTVYI
FVQSILSVIPSLCIWIAYLLPAHTMAGLYVYTASNDAGIYLYMGYMILYLMTMQTLALFV
SHFLAPRKIVASLFTLLIMLIVNVSVGGYFIHPSNIPEFIKWLEYASPQKWTLPLFAKDE
YSDETIANSGAMQLCRNKHVQRQEIIVQQPCKINGSEILLDFSLQPHQHVLDSSDIYIST
LIGMLIACIGLFLLTAISFIANISRIFRNKNKRR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1815.t1 | Coils | Coil | Coil | 869 | 874 | - |
| 6 | g1815.t1 | Gene3D | G3DSA:3.40.50.300 | - | 276 | 503 | 1.3E-28 |
| 27 | g1815.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 155 | - |
| 28 | g1815.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 148 | - |
| 3 | g1815.t1 | PANTHER | PTHR48041:SF89 | FI03229P | 24 | 869 | 0.0 |
| 4 | g1815.t1 | PANTHER | PTHR48041 | ABC TRANSPORTER G FAMILY MEMBER 28 | 24 | 869 | 0.0 |
| 2 | g1815.t1 | Pfam | PF00005 | ABC transporter | 285 | 427 | 3.8E-9 |
| 1 | g1815.t1 | Pfam | PF01061 | ABC-2 type transporter | 562 | 776 | 1.7E-15 |
| 8 | g1815.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 578 | - |
| 20 | g1815.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 579 | 601 | - |
| 12 | g1815.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 602 | 620 | - |
| 17 | g1815.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 621 | 638 | - |
| 11 | g1815.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 639 | 657 | - |
| 16 | g1815.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 658 | 679 | - |
| 13 | g1815.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 680 | 698 | - |
| 19 | g1815.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 699 | 720 | - |
| 10 | g1815.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 721 | 728 | - |
| 15 | g1815.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 729 | 751 | - |
| 14 | g1815.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 752 | 835 | - |
| 18 | g1815.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 836 | 864 | - |
| 9 | g1815.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 865 | 874 | - |
| 29 | g1815.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 267 | 498 | 11.545 |
| 5 | g1815.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 280 | 492 | 7.14E-25 |
| 25 | g1815.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 579 | 601 | - |
| 22 | g1815.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 616 | 635 | - |
| 24 | g1815.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 656 | 678 | - |
| 26 | g1815.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 698 | 720 | - |
| 21 | g1815.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 729 | 751 | - |
| 23 | g1815.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 841 | 863 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
- This transcript has been annotated with K05684 (ATP-binding cassette, subfamily G (WHITE), member 8 (sterolin 2))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
